SRR2934859.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934859.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1162913
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTCTGC	3399	0.2922832576469607	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGC	3056	0.2627883599203036	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2812	0.24180656678530552	No Hit
CCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTCTGC	2653	0.22813400486536825	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCG	2494	0.214461442945431	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTC	2471	0.21248365096959101	No Hit
CTGTCTCTTATACACATCTGACGCTGGCATCATCGTATGCCGTCTTCTGCT	1849	0.1589972766664402	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCCGCGT	30	2.1655233E-6	45.000004	31
ATCGGGT	30	2.1655233E-6	45.000004	4
ATCGCGT	30	2.1655233E-6	45.000004	26
GCGTACC	30	2.1655233E-6	45.000004	29
GCGAATA	20	7.033323E-4	45.0	9
CGCGCAT	25	3.8908343E-5	45.0	36
TAGCCGT	20	7.033323E-4	45.0	44
TCGTATC	25	3.8908343E-5	45.0	11
CGTCCCG	25	3.8908343E-5	45.0	11
AAAATCG	20	7.033323E-4	45.0	36
AATCGGC	20	7.033323E-4	45.0	3
ACAATCG	60	3.6379788E-12	41.250004	26
AGTACGG	120	0.0	41.250004	2
TTTAGCG	45	1.9283107E-8	40.000004	1
CGCAGTA	80	0.0	39.375	37
GATTCGA	40	3.4582627E-7	39.375	11
GCGTAAG	75	0.0	39.000004	1
CGGGTAC	110	0.0	38.863632	6
AAATCGG	35	6.248354E-6	38.571426	2
ACACGAC	140	0.0	38.571426	26