SRR2934858.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934858.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1159627
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC	5624	0.48498353349827145	No Hit
CCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC	4281	0.36917043152668916	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGC	3697	0.31880941026726695	No Hit
CTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGCT	3374	0.2909556262487851	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3349	0.28879976061267976	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCG	3316	0.2859540179730206	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTC	3230	0.27853784018481803	No Hit
TCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC	1617	0.13944138934329744	No Hit
ACTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTGC	1279	0.11029408594315242	No Hit
CGCTGTCTCTTATACACATCTGACGCTCACCTCTTCGTATGCCGTCTTCTG	1166	0.100549573267956	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAG	25	3.8908263E-5	45.000004	15
CTTCGAT	30	2.1655178E-6	45.000004	29
TCGTTTA	30	2.1655178E-6	45.000004	38
TCGTTAC	30	2.1655178E-6	45.000004	42
TCGATAA	25	3.8908263E-5	45.000004	42
TACGACT	30	2.1655178E-6	45.000004	24
AACGCAT	25	3.8908263E-5	45.000004	45
GAACGAC	30	2.1655178E-6	45.000004	44
ACGTAAG	25	3.8908263E-5	45.000004	1
GATTACG	30	2.1655178E-6	45.000004	1
CTCCGTA	20	7.033314E-4	45.0	31
CGTCTTA	20	7.033314E-4	45.0	40
ATTCGAC	20	7.033314E-4	45.0	10
CGTTAGA	20	7.033314E-4	45.0	11
CGAATTA	20	7.033314E-4	45.0	30
GGACGAT	40	6.8157533E-9	45.0	8
TACGTCC	20	7.033314E-4	45.0	45
ACGAAAC	20	7.033314E-4	45.0	24
CGTTTTT	2060	0.0	41.286407	1
AGTAACG	60	3.6379788E-12	41.250004	1