Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934856.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 918019 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGC | 4616 | 0.5028218370208024 | TruSeq Adapter, Index 21 (95% over 23bp) |
CCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGC | 3640 | 0.39650595466978356 | TruSeq Adapter, Index 21 (95% over 23bp) |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3616 | 0.39389162969393876 | No Hit |
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGC | 3395 | 0.36981805387470196 | No Hit |
GAATGATACCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCG | 2947 | 0.32101732099226704 | No Hit |
CTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGCT | 2447 | 0.2665522173288353 | Illumina Paired End PCR Primer 2 (95% over 21bp) |
GAATCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTC | 2406 | 0.2620860788284338 | No Hit |
TCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGC | 1559 | 0.16982219322258038 | TruSeq Adapter, Index 21 (95% over 23bp) |
ACTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGC | 1242 | 0.1352913174999646 | No Hit |
CGCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTG | 1002 | 0.10914806774151734 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCACGAT | 20 | 7.032543E-4 | 45.000004 | 24 |
AACGTCA | 20 | 7.032543E-4 | 45.000004 | 44 |
GTCGCGA | 20 | 7.032543E-4 | 45.000004 | 21 |
TCGTTAA | 20 | 7.032543E-4 | 45.000004 | 20 |
TCGCACT | 20 | 7.032543E-4 | 45.000004 | 45 |
TCGCAAT | 25 | 3.890189E-5 | 45.000004 | 42 |
CGTATTG | 20 | 7.032543E-4 | 45.000004 | 12 |
GGTCGTA | 20 | 7.032543E-4 | 45.000004 | 32 |
GCGAATC | 20 | 7.032543E-4 | 45.000004 | 45 |
TTAGCGT | 20 | 7.032543E-4 | 45.000004 | 16 |
CGTGCCG | 20 | 7.032543E-4 | 45.000004 | 31 |
TAGCGTC | 20 | 7.032543E-4 | 45.000004 | 17 |
TAGAACG | 20 | 7.032543E-4 | 45.000004 | 1 |
CCAATAG | 20 | 7.032543E-4 | 45.000004 | 43 |
CACGCAT | 20 | 7.032543E-4 | 45.000004 | 37 |
GCGCCTA | 20 | 7.032543E-4 | 45.000004 | 28 |
TTCGTTC | 25 | 3.890189E-5 | 45.000004 | 18 |
ATGCTCG | 20 | 7.032543E-4 | 45.000004 | 1 |
CGCGAAT | 20 | 7.032543E-4 | 45.000004 | 44 |
CATTCGT | 20 | 7.032543E-4 | 45.000004 | 22 |