FastQCFastQC Report
Sat 14 Jan 2017
SRR2934856.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934856.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences918019
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGC46160.5028218370208024TruSeq Adapter, Index 21 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGC36400.39650595466978356TruSeq Adapter, Index 21 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36160.39389162969393876No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGC33950.36981805387470196No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCG29470.32101732099226704No Hit
CTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGCT24470.2665522173288353Illumina Paired End PCR Primer 2 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTC24060.2620860788284338No Hit
TCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGC15590.16982219322258038TruSeq Adapter, Index 21 (95% over 23bp)
ACTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTGC12420.1352913174999646No Hit
CGCTGTCTCTTATACACATCTGACGCTTCCGGTTTCGTATGCCGTCTTCTG10020.10914806774151734No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCACGAT207.032543E-445.00000424
AACGTCA207.032543E-445.00000444
GTCGCGA207.032543E-445.00000421
TCGTTAA207.032543E-445.00000420
TCGCACT207.032543E-445.00000445
TCGCAAT253.890189E-545.00000442
CGTATTG207.032543E-445.00000412
GGTCGTA207.032543E-445.00000432
GCGAATC207.032543E-445.00000445
TTAGCGT207.032543E-445.00000416
CGTGCCG207.032543E-445.00000431
TAGCGTC207.032543E-445.00000417
TAGAACG207.032543E-445.0000041
CCAATAG207.032543E-445.00000443
CACGCAT207.032543E-445.00000437
GCGCCTA207.032543E-445.00000428
TTCGTTC253.890189E-545.00000418
ATGCTCG207.032543E-445.0000041
CGCGAAT207.032543E-445.00000444
CATTCGT207.032543E-445.00000422