SRR2934854.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934854.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1585187
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGC	8148	0.5140087573264227	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCG	7122	0.4492845323611662	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTC	6093	0.3843710552761283	No Hit
GCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGC	4804	0.30305572781003126	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3508	0.22129881206444413	No Hit
CCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGC	2968	0.18723343050378283	No Hit
CTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGCT	2302	0.14521945991230056	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGAAGCCAT	1737	0.1095769773534605	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGCGT	20	7.0340966E-4	45.000004	23
CGCGAAT	20	7.0340966E-4	45.000004	19
TAGTTCG	20	7.0340966E-4	45.000004	28
CGTACGT	20	7.0340966E-4	45.000004	28
TGCGTAC	20	7.0340966E-4	45.000004	18
CTTACCG	20	7.0340966E-4	45.000004	1
AAATGCG	50	2.1827873E-11	45.0	1
TCCGCGT	30	2.1660253E-6	44.999996	43
ACCGTAA	30	2.1660253E-6	44.999996	17
GTATGCG	105	0.0	42.857143	1
GCTACGA	255	0.0	42.35294	10
ATTACGC	55	6.184564E-11	40.909092	12
TATACGG	105	0.0	40.714287	2
AATTGCG	50	1.0822987E-9	40.5	1
TATAGCG	90	0.0	40.0	1
CGAATAT	250	0.0	39.600002	14
TACGGCT	995	0.0	39.572865	7
TACGGGA	850	0.0	39.17647	4
CTACGAA	265	0.0	39.056602	11
TTAGGCG	145	0.0	38.793102	1