SRR2934852.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934852.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	593478
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	4046	0.6817438894112335	No Hit
CCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	3648	0.6146815888710281	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2341	0.3944543858407557	No Hit
CTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGCT	2054	0.34609539022507996	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	1556	0.2621832654285416	No Hit
ACTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC	1102	0.18568506330478973	No Hit
CGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG	921	0.15518688140082698	No Hit
CTACACAAAAATAAATAAAGGTAAAAACTCTCATACGCGCATGTCATCGGG	857	0.14440299387677386	No Hit
GCCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG	799	0.13463009580810073	No Hit
GGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG	675	0.1137363137302478	No Hit
AGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG	671	0.11306232075999446	No Hit
ACCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG	644	0.10851286821078455	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTATTAG	35	1.210592E-7	45.000004	1
TAGACTC	35	1.210592E-7	45.000004	28
TCTTACG	35	1.210592E-7	45.000004	33
TAAACGG	35	1.210592E-7	45.000004	2
GTCGTCA	35	1.210592E-7	45.000004	20
TATAGCG	35	1.210592E-7	45.000004	1
ATACGAA	95	0.0	45.000004	19
CCACGCG	65	0.0	45.000004	1
GCATCGA	35	1.210592E-7	45.000004	27
AGTCGTC	35	1.210592E-7	45.000004	19
TAATCAC	20	7.0305256E-4	45.0	35
TGATCGG	25	3.8885177E-5	45.0	11
TCACGCA	20	7.0305256E-4	45.0	20
GTACCTT	40	6.8048394E-9	45.0	31
ACCGGCA	20	7.0305256E-4	45.0	4
GTCGATT	25	3.8885177E-5	45.0	16
AGTCATG	20	7.0305256E-4	45.0	24
AGTCAAT	25	3.8885177E-5	45.0	20
TTTACGT	20	7.0305256E-4	45.0	11
GAATGCG	20	7.0305256E-4	45.0	9