##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934852.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 593478 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.12440393746693 33.0 31.0 34.0 30.0 34.0 2 32.3055125885037 34.0 31.0 34.0 30.0 34.0 3 32.298161010180664 34.0 31.0 34.0 30.0 34.0 4 35.86606748691611 37.0 35.0 37.0 35.0 37.0 5 35.76261125096465 37.0 35.0 37.0 35.0 37.0 6 35.69218404052046 37.0 35.0 37.0 33.0 37.0 7 36.01115626864012 37.0 35.0 37.0 35.0 37.0 8 35.8216698849831 37.0 35.0 37.0 35.0 37.0 9 37.49722483394498 39.0 37.0 39.0 35.0 39.0 10 37.30705603240558 39.0 37.0 39.0 34.0 39.0 11 37.172092310077204 39.0 37.0 39.0 34.0 39.0 12 36.92444370305218 39.0 35.0 39.0 33.0 39.0 13 36.65579179009163 39.0 35.0 39.0 33.0 39.0 14 37.72774053966617 40.0 36.0 41.0 33.0 41.0 15 37.820101166344834 40.0 36.0 41.0 33.0 41.0 16 37.97805310390613 40.0 36.0 41.0 33.0 41.0 17 37.99901260029858 40.0 36.0 41.0 34.0 41.0 18 37.97156929153229 40.0 36.0 41.0 34.0 41.0 19 37.93921762896013 40.0 36.0 41.0 34.0 41.0 20 37.86396631383135 40.0 35.0 41.0 34.0 41.0 21 37.77441960780349 39.0 35.0 41.0 34.0 41.0 22 37.68606923929784 39.0 35.0 41.0 33.0 41.0 23 37.556859731953 39.0 35.0 41.0 33.0 41.0 24 37.30962226063982 39.0 35.0 41.0 33.0 41.0 25 37.22892508231139 39.0 35.0 41.0 32.0 41.0 26 37.38701687341401 39.0 35.0 41.0 33.0 41.0 27 37.386993283660054 39.0 35.0 41.0 33.0 41.0 28 37.36714082072124 39.0 35.0 41.0 33.0 41.0 29 37.404426111835654 39.0 35.0 41.0 33.0 41.0 30 37.22637738888383 39.0 35.0 41.0 33.0 41.0 31 37.10266766417626 39.0 35.0 41.0 32.0 41.0 32 37.014187552023834 39.0 35.0 41.0 32.0 41.0 33 36.7902752924287 39.0 35.0 41.0 31.0 41.0 34 36.71681342863594 39.0 35.0 41.0 31.0 41.0 35 36.648057720757976 39.0 35.0 41.0 31.0 41.0 36 36.48159493696481 39.0 35.0 41.0 31.0 41.0 37 36.41464721522954 39.0 35.0 40.0 31.0 41.0 38 36.35889283174777 38.0 35.0 40.0 31.0 41.0 39 36.41449388182881 39.0 35.0 40.0 31.0 41.0 40 36.34281978438965 39.0 35.0 40.0 31.0 41.0 41 36.24123387893064 38.0 35.0 40.0 30.0 41.0 42 36.06418435055723 38.0 35.0 40.0 30.0 41.0 43 35.97613727888818 38.0 35.0 40.0 30.0 41.0 44 35.938941291842326 38.0 35.0 40.0 30.0 41.0 45 35.898703911518204 38.0 35.0 40.0 30.0 41.0 46 35.81314555889182 38.0 35.0 40.0 29.0 41.0 47 35.634412733075195 38.0 35.0 40.0 29.0 41.0 48 35.59712575697836 38.0 35.0 40.0 29.0 41.0 49 35.57825058384641 37.0 35.0 40.0 29.0 41.0 50 35.451091700113565 37.0 34.0 40.0 29.0 41.0 51 34.45540694010562 36.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 2.0 9 7.0 10 8.0 11 9.0 12 10.0 13 7.0 14 18.0 15 22.0 16 35.0 17 66.0 18 146.0 19 283.0 20 517.0 21 828.0 22 1162.0 23 1736.0 24 2656.0 25 3910.0 26 5189.0 27 6065.0 28 6856.0 29 7977.0 30 9700.0 31 12224.0 32 16153.0 33 23238.0 34 44057.0 35 63290.0 36 47180.0 37 71655.0 38 121194.0 39 147169.0 40 108.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.25086018352829 22.022046310056986 24.349512534584264 13.377580971830463 2 33.33367032981846 22.64447881808593 24.691226970502697 19.330623881592913 3 30.17382278702833 23.70719723393285 27.953015950043643 18.165964028995177 4 28.593309271784296 24.81995962782108 26.816326805711416 19.770404294683207 5 25.139263797478595 28.26456920054324 26.124136025261258 20.472030976716912 6 26.350429165023808 31.62543514671142 26.094648832812673 15.929486855452096 7 77.29283983568051 6.18017854073782 10.516312314862555 6.01066930871911 8 76.26651704022727 5.2970792514634075 11.178341909893879 7.258061798415443 9 70.63345229309257 6.769922389709475 13.831346739053513 8.765278578144429 10 41.730274753234326 22.80809061161492 20.230067500395972 15.231567134754783 11 32.10531814153178 22.76495506151871 24.470157276259606 20.6595695206899 12 29.136716104051036 21.20567232483765 29.93337579489046 19.724235776220855 13 23.160588935057408 28.51613707669029 30.830797434782752 17.492476553469547 14 18.193092246047872 30.741156369739066 29.75476765777333 21.310983726439733 15 15.375970128631558 24.835966960864596 40.49905809482407 19.28900481567977 16 18.62562723470794 23.855644185631146 35.68590579600255 21.83282278365837 17 18.136645334789158 23.492530472907166 28.99399809259989 29.376826099703777 18 20.422997988130984 24.25667000293187 33.96654972888633 21.35378228005082 19 23.07414933662242 25.23682427992276 28.460869653129517 23.228156730325303 20 24.701168366813935 26.10913968167312 28.245697397376148 20.9439945541368 21 22.405211313646 25.935754990075456 30.472233174607986 21.18680052167056 22 20.336389891453432 25.598421508463666 26.71185789532215 27.353330704760747 23 18.437583196007264 27.106480779405473 29.145309514421765 25.310626510165502 24 22.19677898759516 22.512207697673713 31.99141332955897 23.299599985172154 25 19.581180768284586 25.774670670184914 29.591324362486898 25.052824199043606 26 20.217261633961158 28.056305372734965 28.079052635481013 23.64738035782287 27 20.790492655161607 30.027734810725924 28.810166509963302 20.37160602414917 28 17.41783183201399 26.67327179777515 30.69498785127671 25.213908518934147 29 20.145312884386616 24.62096320335379 29.879456357270197 25.354267554989402 30 21.494309814348636 27.667748425383927 28.76568297392658 22.07225878634086 31 24.638655518822937 28.92440831842124 23.705849247992344 22.73108691476348 32 25.692949022541693 26.54521313342702 24.767556674383886 22.9942811696474 33 23.271292280421516 26.79475903066331 28.132298080131022 21.80165060878415 34 22.67396601053451 25.419307876618845 28.616562029258034 23.290164083588607 35 22.396617903275267 23.748479303360867 29.035448660270475 24.81945413309339 36 25.077256444215283 26.905799372512547 28.71648148709809 19.30046269617408 37 22.726874458699395 27.68527224261051 29.204957892289187 20.382895406400912 38 19.743781572358202 28.38403445452064 26.765271838214726 25.106912134906434 39 22.78635433832425 23.93837682272974 30.72110507887403 22.554163760071983 40 26.530722284566572 21.629276906641863 29.87962485551276 21.960375953278806 41 22.145892518341036 24.44842100296894 27.12956503863665 26.27612144005338 42 24.435615136534125 23.739885892990138 28.476034494960217 23.34846447551552 43 23.39951944301221 24.216398922959232 28.51681106966054 23.867270564368013 44 21.33811194349243 24.19146118305986 28.522371511665135 25.94805536178258 45 21.748068167649013 24.69190096347295 25.778377631521305 27.781653237356736 46 24.72560061198562 24.575300179619127 28.58437886492844 22.114720343466818 47 20.904902961862106 24.284977707682508 31.4191932978139 23.39092603264148 48 20.79672709013645 22.28439807372809 31.22154485928712 25.697329976848344 49 22.446493383074014 20.089371467855592 34.04304793101008 23.421087218060315 50 20.93371616134044 22.22104273452428 31.467215296944453 25.37802580719083 51 20.371437525906604 22.520969606287007 26.740671094800483 30.366921773005906 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 410.0 1 489.0 2 568.0 3 2315.5 4 4063.0 5 2767.5 6 1472.0 7 1486.5 8 1501.0 9 1638.5 10 1776.0 11 1718.5 12 1661.0 13 1586.5 14 1512.0 15 1544.5 16 1577.0 17 1439.5 18 1302.0 19 1479.5 20 1657.0 21 1566.5 22 1476.0 23 1832.0 24 2188.0 25 2275.5 26 2926.0 27 3489.0 28 4123.5 29 4758.0 30 5576.0 31 6394.0 32 6968.5 33 7543.0 34 9942.5 35 12342.0 36 13415.5 37 14489.0 38 16208.5 39 17928.0 40 21139.0 41 24350.0 42 29992.0 43 35634.0 44 39366.5 45 43099.0 46 50304.0 47 57509.0 48 65794.0 49 74079.0 50 73846.0 51 73613.0 52 62418.0 53 51223.0 54 42905.0 55 34587.0 56 30351.0 57 26115.0 58 23639.0 59 21163.0 60 19626.0 61 18089.0 62 16336.0 63 14583.0 64 12830.0 65 11077.0 66 9231.0 67 7385.0 68 5661.5 69 3938.0 70 3206.0 71 2474.0 72 2129.0 73 1784.0 74 1506.5 75 847.5 76 466.0 77 470.5 78 475.0 79 274.0 80 73.0 81 48.0 82 23.0 83 17.5 84 12.0 85 16.5 86 21.0 87 13.5 88 6.0 89 4.0 90 2.0 91 1.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 593478.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.049391932982072 #Duplication Level Percentage of deduplicated Percentage of total 1 67.62148317954089 16.938770352538743 2 12.556599883618306 6.290703836607839 3 5.758369981085415 4.327309996539813 4 3.166879676941138 3.1731364092917684 5 1.9779723290700542 2.4773502051734586 6 1.3753292183362074 2.067069637619132 7 0.9078613525064715 1.5918962387819258 8 0.6684360442911094 1.3395133164464128 9 0.5191653706034528 1.170429916165 >10 3.6792978176877233 20.11988326024452 >50 1.4147482794865158 25.708200353085704 >100 0.3457066127021779 11.50979881995509 >500 0.004075127065251606 0.7769947852352466 >1k 0.004075127065251606 2.508942872315345 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC 4046 0.6817438894112335 No Hit CCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC 3648 0.6146815888710281 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2341 0.3944543858407557 No Hit CTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGCT 2054 0.34609539022507996 Illumina Single End Adapter 2 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC 1556 0.2621832654285416 No Hit ACTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTGC 1102 0.18568506330478973 No Hit CGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG 921 0.15518688140082698 No Hit CTACACAAAAATAAATAAAGGTAAAAACTCTCATACGCGCATGTCATCGGG 857 0.14440299387677386 No Hit GCCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG 799 0.13463009580810073 No Hit GGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG 675 0.1137363137302478 No Hit AGCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG 671 0.11306232075999446 No Hit ACCTGTCTCTTATACACATCTGACGCGAACTGGTTCGTATGCCGTCTTCTG 644 0.10851286821078455 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.6849824256333007E-4 0.0 0.0 0.3673261687880595 0.0 2 1.6849824256333007E-4 0.0 0.0 2.2433856014881766 0.0 3 1.6849824256333007E-4 0.0 0.0 3.1467046798701888 0.0 4 1.6849824256333007E-4 0.0 0.0 4.092822311863287 0.0 5 1.6849824256333007E-4 0.0 0.0 6.683314293031923 0.0 6 1.6849824256333007E-4 0.0 0.0 7.971483357428582 0.0 7 1.6849824256333007E-4 0.0 0.0 9.266560849770338 0.0 8 1.6849824256333007E-4 0.0 0.0 11.174971945042612 0.0 9 1.6849824256333007E-4 0.0 0.0 11.854019862572834 0.0 10 1.6849824256333007E-4 0.0 0.0 13.318101092205609 0.0 11 1.6849824256333007E-4 0.0 0.0 15.65129625698004 0.0 12 1.6849824256333007E-4 0.0 0.0 17.411428898796586 0.0 13 1.6849824256333007E-4 0.0 0.0 18.100081216152915 0.0 14 1.6849824256333007E-4 0.0 0.0 18.362095983338893 0.0 15 1.6849824256333007E-4 0.0 0.0 18.96414020401767 0.0 16 1.6849824256333007E-4 0.0 0.0 20.117342176121102 0.0 17 1.6849824256333007E-4 0.0 0.0 21.448646790613974 0.0 18 1.6849824256333007E-4 0.0 0.0 23.00927751323554 0.0 19 1.6849824256333007E-4 0.0 0.0 23.786391407937614 0.0 20 1.6849824256333007E-4 0.0 0.0 24.59619396169698 0.0 21 1.6849824256333007E-4 0.0 0.0 25.58696362796936 0.0 22 1.6849824256333007E-4 0.0 0.0 26.53560873360091 0.0 23 1.6849824256333007E-4 0.0 0.0 27.556371087049563 0.0 24 1.6849824256333007E-4 0.0 0.0 28.28950694044261 0.0 25 1.6849824256333007E-4 0.0 0.0 28.97108233161128 0.0 26 1.6849824256333007E-4 0.0 0.0 29.58273095211617 0.0 27 1.6849824256333007E-4 0.0 0.0 30.1620279100489 0.0 28 1.6849824256333007E-4 0.0 0.0 30.751771759020553 0.0 29 3.3699648512666014E-4 0.0 0.0 31.348929530664996 0.0 30 3.3699648512666014E-4 0.0 0.0 32.07043900532118 0.0 31 3.3699648512666014E-4 0.0 0.0 32.7154502778536 0.0 32 3.3699648512666014E-4 0.0 0.0 33.29441023930121 0.0 33 3.3699648512666014E-4 0.0 0.0 33.888535042579505 0.0 34 3.3699648512666014E-4 0.0 0.0 34.468674491725054 0.0 35 5.054947276899902E-4 0.0 0.0 35.14148797428043 0.0 36 5.054947276899902E-4 0.0 0.0 35.74454318441459 0.0 37 5.054947276899902E-4 0.0 0.0 36.29014049383465 0.0 38 5.054947276899902E-4 0.0 0.0 36.85949605545614 0.0 39 5.054947276899902E-4 0.0 0.0 37.45631683061546 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTATTAG 35 1.210592E-7 45.000004 1 TAGACTC 35 1.210592E-7 45.000004 28 TCTTACG 35 1.210592E-7 45.000004 33 TAAACGG 35 1.210592E-7 45.000004 2 GTCGTCA 35 1.210592E-7 45.000004 20 TATAGCG 35 1.210592E-7 45.000004 1 ATACGAA 95 0.0 45.000004 19 CCACGCG 65 0.0 45.000004 1 GCATCGA 35 1.210592E-7 45.000004 27 AGTCGTC 35 1.210592E-7 45.000004 19 TAATCAC 20 7.0305256E-4 45.0 35 TGATCGG 25 3.8885177E-5 45.0 11 TCACGCA 20 7.0305256E-4 45.0 20 GTACCTT 40 6.8048394E-9 45.0 31 ACCGGCA 20 7.0305256E-4 45.0 4 GTCGATT 25 3.8885177E-5 45.0 16 AGTCATG 20 7.0305256E-4 45.0 24 AGTCAAT 25 3.8885177E-5 45.0 20 TTTACGT 20 7.0305256E-4 45.0 11 GAATGCG 20 7.0305256E-4 45.0 9 >>END_MODULE