SRR2934846.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934846.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1769644
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8363	0.4725809258811377	No Hit
GCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	3161	0.17862349715536005	No Hit
CGCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTG	2843	0.16065378121249246	No Hit
CCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGC	2784	0.1573197773111428	No Hit
CTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTTCTGCT	2302	0.1300826606933372	No Hit
GTTGAATCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTC	2189	0.12369719559414209	No Hit
GTTGAATGATACCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATG	1958	0.11064372269224772	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGGCTAAGTCGTATGCCGTCTT	1783	0.10075472806960044	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTGCGTA	20	7.0343213E-4	45.0	31
CGTTTTT	5675	0.0	42.541847	1
TTTCGCG	75	0.0	42.0	1
GTTAACG	55	6.184564E-11	40.909092	1
GCTATCG	40	3.459627E-7	39.375	1
ATGCGAT	40	3.459627E-7	39.375	12
TCGAATC	35	6.250202E-6	38.571426	2
TTAACGG	180	0.0	37.500004	2
AGGGCGA	1475	0.0	37.067795	6
GGATCGA	195	0.0	36.923077	8
GCGTTAG	165	0.0	36.81818	1
GTTGAAT	1830	0.0	36.270493	1
TAAGGGA	2010	0.0	36.044777	4
GACCGGT	25	0.0021074149	36.000004	4
CGTTCGC	25	0.0021074149	36.000004	17
TCCCGTT	25	0.0021074149	36.000004	30
TATCGAG	25	0.0021074149	36.000004	1
GGACCGA	900	0.0	36.0	8
CGTAAGG	295	0.0	35.847458	2
TGCGAAG	170	0.0	35.735294	1