SRR2934845.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934845.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1047538
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC	6986	0.6668970481261778	Illumina PCR Primer Index 11 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC	5134	0.4901015524019176	Illumina PCR Primer Index 11 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4042	0.3858571240375051	No Hit
CTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGCT	3600	0.34366295065190955	Illumina PCR Primer Index 11 (95% over 24bp)
TCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC	2566	0.24495531427022216	Illumina PCR Primer Index 11 (95% over 23bp)
ACTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC	1852	0.17679549572426012	Illumina PCR Primer Index 11 (95% over 23bp)
CGCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTG	1320	0.12600974857236683	Illumina PCR Primer Index 11 (95% over 22bp)
GCCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTG	1257	0.1199956469359584	Illumina PCR Primer Index 11 (95% over 22bp)
AGCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTG	1112	0.1061536669791454	Illumina PCR Primer Index 11 (95% over 22bp)
ACCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTG	1086	0.10367165677999271	Illumina PCR Primer Index 11 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTAGCG	35	1.2117926E-7	45.000004	1
CTATACG	35	1.2117926E-7	45.000004	1
TAACGCG	35	1.2117926E-7	45.000004	1
TCGATAG	35	1.2117926E-7	45.000004	15
ATATACG	35	1.2117926E-7	45.000004	1
CACGTCA	75	0.0	45.000004	34
TATACGG	75	0.0	45.000004	2
GCGTAAG	75	0.0	45.000004	1
TCGCGGA	35	1.2117926E-7	45.000004	3
ACGCGAA	20	7.0330006E-4	45.0	1
TATTTCG	25	3.8905677E-5	45.0	37
CTTCGCA	20	7.0330006E-4	45.0	40
GATACGA	25	3.8905677E-5	45.0	10
AAATCCG	20	7.0330006E-4	45.0	1
ATTAGCG	50	2.1827873E-11	45.0	1
CCGATCA	20	7.0330006E-4	45.0	22
GCGGTAT	25	3.8905677E-5	45.0	33
TTAGCGA	20	7.0330006E-4	45.0	28
GACGTTA	25	3.8905677E-5	45.0	16
ACCGCCG	20	7.0330006E-4	45.0	28