FastQCFastQC Report
Sat 14 Jan 2017
SRR2934845.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934845.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1047538
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC69860.6668970481261778Illumina PCR Primer Index 11 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC51340.4901015524019176Illumina PCR Primer Index 11 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40420.3858571240375051No Hit
CTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGCT36000.34366295065190955Illumina PCR Primer Index 11 (95% over 24bp)
TCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC25660.24495531427022216Illumina PCR Primer Index 11 (95% over 23bp)
ACTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC18520.17679549572426012Illumina PCR Primer Index 11 (95% over 23bp)
CGCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTG13200.12600974857236683Illumina PCR Primer Index 11 (95% over 22bp)
GCCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTG12570.1199956469359584Illumina PCR Primer Index 11 (95% over 22bp)
AGCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTG11120.1061536669791454Illumina PCR Primer Index 11 (95% over 22bp)
ACCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTG10860.10367165677999271Illumina PCR Primer Index 11 (95% over 22bp)

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CCTAGCG351.2117926E-745.0000041
CTATACG351.2117926E-745.0000041
TAACGCG351.2117926E-745.0000041
TCGATAG351.2117926E-745.00000415
ATATACG351.2117926E-745.0000041
CACGTCA750.045.00000434
TATACGG750.045.0000042
GCGTAAG750.045.0000041
TCGCGGA351.2117926E-745.0000043
ACGCGAA207.0330006E-445.01
TATTTCG253.8905677E-545.037
CTTCGCA207.0330006E-445.040
GATACGA253.8905677E-545.010
AAATCCG207.0330006E-445.01
ATTAGCG502.1827873E-1145.01
CCGATCA207.0330006E-445.022
GCGGTAT253.8905677E-545.033
TTAGCGA207.0330006E-445.028
GACGTTA253.8905677E-545.016
ACCGCCG207.0330006E-445.028