Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934845.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1047538 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC | 6986 | 0.6668970481261778 | Illumina PCR Primer Index 11 (95% over 23bp) |
CCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC | 5134 | 0.4901015524019176 | Illumina PCR Primer Index 11 (95% over 23bp) |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4042 | 0.3858571240375051 | No Hit |
CTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGCT | 3600 | 0.34366295065190955 | Illumina PCR Primer Index 11 (95% over 24bp) |
TCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC | 2566 | 0.24495531427022216 | Illumina PCR Primer Index 11 (95% over 23bp) |
ACTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTGC | 1852 | 0.17679549572426012 | Illumina PCR Primer Index 11 (95% over 23bp) |
CGCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTG | 1320 | 0.12600974857236683 | Illumina PCR Primer Index 11 (95% over 22bp) |
GCCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTG | 1257 | 0.1199956469359584 | Illumina PCR Primer Index 11 (95% over 22bp) |
AGCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTG | 1112 | 0.1061536669791454 | Illumina PCR Primer Index 11 (95% over 22bp) |
ACCTGTCTCTTATACACATCTGACGCCTAACACCTCGTATGCCGTCTTCTG | 1086 | 0.10367165677999271 | Illumina PCR Primer Index 11 (95% over 22bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CCTAGCG | 35 | 1.2117926E-7 | 45.000004 | 1 |
CTATACG | 35 | 1.2117926E-7 | 45.000004 | 1 |
TAACGCG | 35 | 1.2117926E-7 | 45.000004 | 1 |
TCGATAG | 35 | 1.2117926E-7 | 45.000004 | 15 |
ATATACG | 35 | 1.2117926E-7 | 45.000004 | 1 |
CACGTCA | 75 | 0.0 | 45.000004 | 34 |
TATACGG | 75 | 0.0 | 45.000004 | 2 |
GCGTAAG | 75 | 0.0 | 45.000004 | 1 |
TCGCGGA | 35 | 1.2117926E-7 | 45.000004 | 3 |
ACGCGAA | 20 | 7.0330006E-4 | 45.0 | 1 |
TATTTCG | 25 | 3.8905677E-5 | 45.0 | 37 |
CTTCGCA | 20 | 7.0330006E-4 | 45.0 | 40 |
GATACGA | 25 | 3.8905677E-5 | 45.0 | 10 |
AAATCCG | 20 | 7.0330006E-4 | 45.0 | 1 |
ATTAGCG | 50 | 2.1827873E-11 | 45.0 | 1 |
CCGATCA | 20 | 7.0330006E-4 | 45.0 | 22 |
GCGGTAT | 25 | 3.8905677E-5 | 45.0 | 33 |
TTAGCGA | 20 | 7.0330006E-4 | 45.0 | 28 |
GACGTTA | 25 | 3.8905677E-5 | 45.0 | 16 |
ACCGCCG | 20 | 7.0330006E-4 | 45.0 | 28 |