FastQCFastQC Report
Sat 14 Jan 2017
SRR2934843.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934843.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences535823
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGC32480.6061703211694908No Hit
CCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGC22830.4260735354772005No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT20790.3880012616106438No Hit
CTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGCT19370.3614999729388249No Hit
TCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGC12530.23384587820978195No Hit
ACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGC9500.17729735379033748No Hit
CGCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTG6610.1233616324793822No Hit
AGCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTG5600.10451212433956736No Hit
ACCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTG5460.10189932123107817No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GCCCATA351.210301E-745.00000425
CAACGTT351.210301E-745.00000418
TCATTCG302.163324E-645.00000415
GCTATCC351.210301E-745.00000419
CGACCGG302.163324E-645.0000043
CCTACGG302.163324E-645.0000042
GTAATGC351.210301E-745.00000428
TCGGAGC302.163324E-645.00000415
TCGTGAC302.163324E-645.00000429
CGAGAGG351.210301E-745.0000042
TCGAGCG351.210301E-745.0000041
TCGACCG302.163324E-645.0000042
GCGAGAC253.888009E-545.021
CTAGATG453.8380676E-1045.01
CGGGTAT1000.045.06
TTGGCGT207.0299115E-445.045
GTCGCGC207.0299115E-445.036
GGTACGC207.0299115E-445.08
ACACGTC207.0299115E-445.040
TACCCCG207.0299115E-445.025