Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934843.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 535823 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGC | 3248 | 0.6061703211694908 | No Hit |
CCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGC | 2283 | 0.4260735354772005 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2079 | 0.3880012616106438 | No Hit |
CTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGCT | 1937 | 0.3614999729388249 | No Hit |
TCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGC | 1253 | 0.23384587820978195 | No Hit |
ACTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTGC | 950 | 0.17729735379033748 | No Hit |
CGCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTG | 661 | 0.1233616324793822 | No Hit |
AGCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTG | 560 | 0.10451212433956736 | No Hit |
ACCTGTCTCTTATACACATCTGACGCCGAGAACTTCGTATGCCGTCTTCTG | 546 | 0.10189932123107817 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GCCCATA | 35 | 1.210301E-7 | 45.000004 | 25 |
CAACGTT | 35 | 1.210301E-7 | 45.000004 | 18 |
TCATTCG | 30 | 2.163324E-6 | 45.000004 | 15 |
GCTATCC | 35 | 1.210301E-7 | 45.000004 | 19 |
CGACCGG | 30 | 2.163324E-6 | 45.000004 | 3 |
CCTACGG | 30 | 2.163324E-6 | 45.000004 | 2 |
GTAATGC | 35 | 1.210301E-7 | 45.000004 | 28 |
TCGGAGC | 30 | 2.163324E-6 | 45.000004 | 15 |
TCGTGAC | 30 | 2.163324E-6 | 45.000004 | 29 |
CGAGAGG | 35 | 1.210301E-7 | 45.000004 | 2 |
TCGAGCG | 35 | 1.210301E-7 | 45.000004 | 1 |
TCGACCG | 30 | 2.163324E-6 | 45.000004 | 2 |
GCGAGAC | 25 | 3.888009E-5 | 45.0 | 21 |
CTAGATG | 45 | 3.8380676E-10 | 45.0 | 1 |
CGGGTAT | 100 | 0.0 | 45.0 | 6 |
TTGGCGT | 20 | 7.0299115E-4 | 45.0 | 45 |
GTCGCGC | 20 | 7.0299115E-4 | 45.0 | 36 |
GGTACGC | 20 | 7.0299115E-4 | 45.0 | 8 |
ACACGTC | 20 | 7.0299115E-4 | 45.0 | 40 |
TACCCCG | 20 | 7.0299115E-4 | 45.0 | 25 |