##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934842.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 360224 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.25823931775784 33.0 31.0 34.0 30.0 34.0 2 32.45908934440792 34.0 31.0 34.0 31.0 34.0 3 32.4356650306476 34.0 31.0 34.0 30.0 34.0 4 35.96918028782091 37.0 35.0 37.0 35.0 37.0 5 35.864528737674334 37.0 35.0 37.0 35.0 37.0 6 35.79228202451808 37.0 35.0 37.0 35.0 37.0 7 36.06314126765568 37.0 35.0 37.0 35.0 37.0 8 35.8768349693524 37.0 35.0 37.0 35.0 37.0 9 37.539108998845165 39.0 38.0 39.0 35.0 39.0 10 37.34161799324865 39.0 37.0 39.0 34.0 39.0 11 37.190120591631874 39.0 37.0 39.0 34.0 39.0 12 37.00588245091943 39.0 35.0 39.0 33.0 39.0 13 36.8574581371591 39.0 35.0 39.0 33.0 39.0 14 37.95483365905659 40.0 37.0 41.0 33.0 41.0 15 38.03458958870036 40.0 37.0 41.0 33.0 41.0 16 38.190983943324156 40.0 37.0 41.0 34.0 41.0 17 38.14413809185396 40.0 36.0 41.0 34.0 41.0 18 38.08293173136715 40.0 36.0 41.0 34.0 41.0 19 37.99426467975482 40.0 36.0 41.0 34.0 41.0 20 37.86991705161233 40.0 35.0 41.0 34.0 41.0 21 37.80081282757396 40.0 35.0 41.0 34.0 41.0 22 37.73541185484587 39.0 35.0 41.0 33.0 41.0 23 37.55840254952474 39.0 35.0 41.0 33.0 41.0 24 37.29081904592698 39.0 35.0 41.0 33.0 41.0 25 37.23406547037399 39.0 35.0 41.0 33.0 41.0 26 37.38691480856356 39.0 35.0 41.0 33.0 41.0 27 37.426606778004796 39.0 35.0 41.0 33.0 41.0 28 37.36078106955672 39.0 35.0 41.0 33.0 41.0 29 37.36326285866572 39.0 35.0 41.0 33.0 41.0 30 37.21451097095141 39.0 35.0 41.0 33.0 41.0 31 37.08771764235587 39.0 35.0 41.0 32.0 41.0 32 36.89899340410411 39.0 35.0 41.0 32.0 41.0 33 36.69600581860176 39.0 35.0 41.0 31.0 41.0 34 36.55083781202807 39.0 35.0 41.0 31.0 41.0 35 36.43932664120103 39.0 35.0 41.0 31.0 41.0 36 36.341651305854136 39.0 35.0 41.0 30.0 41.0 37 36.26966276539042 39.0 35.0 41.0 30.0 41.0 38 36.15667195966954 39.0 35.0 41.0 30.0 41.0 39 36.17059940481478 39.0 35.0 41.0 30.0 41.0 40 36.093533468064315 39.0 35.0 41.0 30.0 41.0 41 35.9563021897486 39.0 35.0 41.0 30.0 41.0 42 35.86085879896953 38.0 35.0 40.0 29.0 41.0 43 35.79268455183441 38.0 35.0 40.0 29.0 41.0 44 35.75195711557253 38.0 35.0 40.0 29.0 41.0 45 35.69582537532202 38.0 35.0 40.0 29.0 41.0 46 35.620408412543306 38.0 35.0 40.0 29.0 41.0 47 35.44744381273874 38.0 35.0 40.0 28.0 41.0 48 35.41220740428178 38.0 35.0 40.0 28.0 41.0 49 35.39475437505552 38.0 35.0 40.0 28.0 41.0 50 35.29627676112641 38.0 35.0 40.0 27.0 41.0 51 34.26941014479879 36.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 8.0 10 10.0 11 8.0 12 11.0 13 12.0 14 11.0 15 23.0 16 27.0 17 54.0 18 118.0 19 202.0 20 384.0 21 640.0 22 997.0 23 1460.0 24 2100.0 25 3004.0 26 3988.0 27 4618.0 28 5039.0 29 4992.0 30 5748.0 31 6968.0 32 9210.0 33 12837.0 34 25231.0 35 34945.0 36 26759.0 37 39276.0 38 69830.0 39 101658.0 40 53.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.98739673092298 23.286066447543753 24.5158568002132 17.21068002132007 2 32.95310695567203 26.832193301945455 22.102636137514438 18.11206360486808 3 30.012436706049566 25.00360886559474 27.493170915874565 17.490783512481123 4 28.360964288886915 24.120269610020433 28.890357111130854 18.6284089899618 5 25.64848538687039 28.19412365639158 26.632595274051702 19.524795682686328 6 25.87889757484232 32.06976770009772 27.227502887092474 14.823831837967488 7 76.45825930532114 6.057064493204228 12.496113529359508 4.988562672115129 8 76.53654392822244 5.851636759349739 11.648030114595363 5.96378919783246 9 71.04829217375855 6.768011015368216 13.807797370525007 8.375899440348228 10 42.79614906280537 20.679632673003464 21.70010882117793 14.824109443013237 11 31.496235675579637 24.364006840188328 25.2431820200764 18.89657546415564 12 28.588045216309855 20.926701163720352 30.067957715199434 20.417295904770366 13 24.772086257439817 25.38559340854579 31.42794483432531 18.414375499689083 14 19.921770898107845 29.065803500044417 30.12542195966954 20.8870036421782 15 18.15398196677623 25.067458026117084 37.37313449409256 19.405425513014123 16 20.492249267122677 23.68609531846851 34.60346895265168 21.21818646175713 17 19.272452696100203 23.90318246424447 30.731988984631787 26.09237585502354 18 21.166274318202007 24.93254197388292 32.22467131562583 21.676512392289244 19 23.23776316958337 27.088977969263567 28.512814248911788 21.16044461224127 20 24.94447899085014 25.72316114417696 29.65543661721595 19.67692324775695 21 23.256917917740072 26.184540730212312 30.938527138669276 19.620014213378344 22 20.493082082259928 24.47171759793906 29.740661366260994 25.29453895354002 23 20.026150395309585 26.380252287465577 29.883905569867636 23.7096917473572 24 22.187028071422226 24.64105667584614 30.541551923247756 22.630363329483878 25 20.091387581060673 26.271431109531846 29.058308163809187 24.578873145598294 26 20.04474993337479 26.578462290130584 30.367771164608687 23.009016611885936 27 20.15051745580528 27.961490628053653 29.977458470285157 21.91053344585591 28 18.094852092031623 26.781669183619083 32.28102513991294 22.84245358443635 29 18.938771431109533 24.1533046104646 32.75128808741228 24.15663587101359 30 20.25489695300702 24.869248023452073 30.85052633916674 24.025328684374166 31 22.089866305409966 26.83025006662521 27.091198809629564 23.98868481833526 32 22.659511859287555 27.40711335169228 26.98820733765657 22.945167451363595 33 21.662076929910278 27.38074087234609 25.527171981877945 25.430010215865686 34 21.08465843475171 25.711224127209736 29.20849249355956 23.99562494447899 35 19.546171271209026 25.264835213644844 29.20988051878831 25.979112996357824 36 21.505785289153415 26.800268721684283 28.314604246246777 23.379341742915518 37 20.812327884871635 27.0745425068846 30.019376832193302 22.093752776050458 38 19.20471706493737 28.01645642711202 26.970718219774366 25.808108288176246 39 21.041907257706317 25.789231145065294 28.57721861952563 24.59164297770276 40 22.89936261881496 22.507661899262683 30.905769743270856 23.687205738651507 41 19.630840810162564 25.099937816469755 29.702907080039086 25.566314293328595 42 21.000544105889666 25.0 29.709847206182822 24.28960868792751 43 21.917473571999643 26.034911610553436 28.085024873412102 23.962589944034825 44 20.174946699831217 26.396075775073285 27.19696633206005 26.232011193035444 45 20.39869636670516 25.612674335968734 26.347494892067157 27.64113440525895 46 22.81830194545616 25.198210002665007 27.8024229368393 24.181065115039534 47 19.24635782179977 25.202651683396997 31.55675357555299 23.994236919250245 48 20.827318557342096 23.537854224038377 29.73455405525451 25.900273163365018 49 20.551101536821534 22.66867282579728 31.890434840543662 24.889790796837524 50 19.944812116905037 22.557353202451807 30.953795416185486 26.54403926445767 51 19.25773962867549 23.605312250155457 27.632528648840722 29.50441947232833 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 403.0 1 570.0 2 737.0 3 2444.5 4 4152.0 5 2803.5 6 1455.0 7 1503.5 8 1552.0 9 1591.5 10 1631.0 11 1598.0 12 1565.0 13 1544.5 14 1524.0 15 1522.0 16 1520.0 17 1457.5 18 1395.0 19 1412.0 20 1429.0 21 1374.0 22 1319.0 23 1343.0 24 1367.0 25 1704.0 26 2218.5 27 2396.0 28 2461.0 29 2526.0 30 3310.5 31 4095.0 32 5102.5 33 6110.0 34 6825.0 35 7540.0 36 8225.5 37 8911.0 38 9819.0 39 10727.0 40 12067.0 41 13407.0 42 17121.5 43 20836.0 44 22658.5 45 24481.0 46 29209.5 47 33938.0 48 37060.5 49 40183.0 50 40341.0 51 40499.0 52 34535.5 53 28572.0 54 25044.0 55 21516.0 56 18997.5 57 16479.0 58 15169.0 59 13859.0 60 13295.0 61 12731.0 62 11466.0 63 10201.0 64 8725.5 65 7250.0 66 6153.0 67 5056.0 68 3850.5 69 2645.0 70 2300.0 71 1955.0 72 1524.5 73 1094.0 74 758.0 75 362.5 76 303.0 77 266.0 78 229.0 79 179.0 80 129.0 81 76.0 82 23.0 83 14.5 84 6.0 85 6.0 86 6.0 87 4.0 88 2.0 89 2.5 90 3.0 91 2.5 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 360224.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.992207294771553 #Duplication Level Percentage of deduplicated Percentage of total 1 70.32269039258532 20.388100173878737 2 12.525887957553792 7.2630628043296435 3 4.748376063329873 4.129977094247729 4 2.292020555448877 2.6580294026980513 5 1.3617945916725556 1.9740715547334757 6 0.9041410778286076 1.5727827331275104 7 0.6060766626700552 1.2300050168457504 8 0.46751555461877575 1.0843446298430113 9 0.42664520976697096 1.1132447726596784 >10 5.561339975681716 39.60399875380992 >50 0.7137335401169604 13.228884661910318 >100 0.06080690774739468 2.746119239250925 >500 0.0049841727661798915 1.0794312101244163 >1k 0.003987338212943913 1.927947952540825 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2408 0.6684729501643422 No Hit CCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTGC 1649 0.4577707204406148 TruSeq Adapter, Index 14 (95% over 23bp) GCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTGC 1562 0.4336190814604246 TruSeq Adapter, Index 14 (95% over 23bp) GAATGATACCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCG 1052 0.29204050812827576 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGC 981 0.2723305498800746 No Hit CTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTGCT 896 0.24873412099138312 Illumina Paired End PCR Primer 2 (95% over 21bp) GAATCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTC 781 0.2168095407302123 No Hit CGCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTG 576 0.15990050635160344 No Hit TCTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTGC 501 0.13908012792040508 TruSeq Adapter, Index 14 (95% over 23bp) ACTGTCTCTTATACACATCTGACGCTCACCGTATCGTATGCCGTCTTCTGC 394 0.10937638802522875 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2665008439193391 0.0 2 0.0 0.0 0.0 1.4865750199875634 0.0 3 0.0 0.0 0.0 2.1372812472239495 0.0 4 0.0 0.0 0.0 2.8287954161854847 0.0 5 0.0 0.0 0.0 4.803400106600337 0.0 6 0.0 0.0 0.0 5.720884782801813 0.0 7 0.0 0.0 0.0 6.739972905747535 0.0 8 0.0 0.0 0.0 8.290952296348939 0.0 9 0.0 0.0 0.0 8.836723816292086 0.0 10 0.0 0.0 0.0 10.167007195522785 0.0 11 0.0 0.0 0.0 11.957837345651594 0.0 12 0.0 0.0 0.0 13.674546948565338 0.0 13 0.0 0.0 0.0 14.22531535933197 0.0 14 0.0 0.0 0.0 14.451285866571911 0.0 15 0.0 0.0 0.0 14.896286754908058 0.0 16 0.0 0.0 0.0 15.771020254064139 0.0 17 0.0 0.0 0.0 16.77012081371591 0.0 18 0.0 0.0 0.0 17.861386248556453 0.0 19 0.0 0.0 0.0 18.594818779426134 0.0 20 0.0 0.0 0.0 19.256351603446745 0.0 21 0.0 0.0 0.0 20.02948165585858 0.0 22 0.0 0.0 0.0 20.820378431198364 0.0 23 0.0 0.0 0.0 21.642922181753576 0.0 24 0.0 0.0 0.0 22.270309585147018 0.0 25 0.0 0.0 0.0 22.787210180332238 0.0 26 0.0 0.0 0.0 23.267189304432797 0.0 27 0.0 0.0 0.0 23.754663764768587 0.0 28 0.0 0.0 0.0 24.252687216842855 0.0 29 0.0 0.0 0.0 24.76986541707382 0.0 30 0.0 0.0 0.0 25.328961979212934 0.0 31 0.0 0.0 0.0 25.85085946522164 0.0 32 0.0 0.0 0.0 26.361375144354625 0.0 33 0.0 0.0 0.0 26.85523452074265 0.0 34 0.0 0.0 0.0 27.35381318290841 0.0 35 0.0 0.0 0.0 27.88320600515235 0.0 36 0.0 0.0 0.0 28.37484454117438 0.0 37 0.0 0.0 0.0 28.881751354712623 0.0 38 0.0 0.0 0.0 29.372279470551657 0.0 39 0.0 0.0 0.0 29.885293595096385 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTACGC 25 3.8854538E-5 45.000004 8 AGATCGC 30 2.161336E-6 45.000004 43 CTCGTCC 30 2.161336E-6 45.000004 37 CCGTGCT 30 2.161336E-6 45.000004 20 CCCGTAG 25 3.8854538E-5 45.000004 25 CGGATAG 25 3.8854538E-5 45.000004 10 TCTCGCG 25 3.8854538E-5 45.000004 32 CGTACTC 25 3.8854538E-5 45.000004 34 TATAGCG 25 3.8854538E-5 45.000004 1 GCGGATA 25 3.8854538E-5 45.000004 9 ATTGAGG 30 2.161336E-6 45.000004 2 GCCCGTA 25 3.8854538E-5 45.000004 24 CGCCCGT 25 3.8854538E-5 45.000004 23 AGGTCGC 30 2.161336E-6 45.000004 10 TTGATCG 45 3.8380676E-10 45.0 2 CTTCGCT 20 7.026831E-4 45.0 18 CCTTAGT 20 7.026831E-4 45.0 29 CGTATGG 20 7.026831E-4 45.0 2 CACGGCG 20 7.026831E-4 45.0 10 TTTCGCA 20 7.026831E-4 45.0 13 >>END_MODULE