SRR2934839.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934839.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1111650
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGC	8844	0.7955741465389287	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGC	6190	0.5568299374803221	Illumina Single End Adapter 2 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGCT	5125	0.4610264021949355	Illumina Single End Adapter 2 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4056	0.36486304142490894	No Hit
TCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGC	3689	0.33184905320919356	Illumina Single End Adapter 2 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTGC	2698	0.24270228938964603	Illumina Single End Adapter 2 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTG	1966	0.17685422570053524	No Hit
ACCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTG	1594	0.14339045562901992	No Hit
GCCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTG	1519	0.13664372779202086	No Hit
GGCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTG	1379	0.12404983582962263	No Hit
AGCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTCTG	1295	0.11649350065218368	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGC	1240	0.11154590023838439	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCTACAGGTCGTATGCCGTCTTC	1227	0.11037646741330455	No Hit
AGCTACCATTACATTTATTATTTTACTTCTACTCACAATTCTAGAATTTGC	1200	0.1079476453919849	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAGCGCG	30	2.1654378E-6	45.000004	1
GCCGCGC	30	2.1654378E-6	45.000004	29
TAGCTAG	30	2.1654378E-6	45.000004	1
GTAACGT	30	2.1654378E-6	45.000004	9
GCCCGAC	30	2.1654378E-6	45.000004	9
CCCGACG	30	2.1654378E-6	45.000004	10
TCTGCGA	20	7.033187E-4	45.0	15
TGTCACG	20	7.033187E-4	45.0	1
CCTTACG	25	3.8907223E-5	45.0	22
GTCGAAG	20	7.033187E-4	45.0	1
CAACGGT	20	7.033187E-4	45.0	15
GCGCGTT	20	7.033187E-4	45.0	9
TTTCGGT	20	7.033187E-4	45.0	26
CGGTTGT	20	7.033187E-4	45.0	18
GACGTAC	20	7.033187E-4	45.0	9
CGGTTAT	25	3.8907223E-5	45.0	26
TGAACCG	25	3.8907223E-5	45.0	1
GCTGCGC	25	3.8907223E-5	45.0	5
ATTCGAC	20	7.033187E-4	45.0	38
CGCGACG	20	7.033187E-4	45.0	15