SRR2934838.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934838.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1242531
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGC	6989	0.5624809360893209	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCG	6271	0.50469565749265	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTC	5583	0.4493248055782914	No Hit
GCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	4757	0.38284759092529685	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3826	0.30791988288420974	No Hit
CCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	3289	0.26470164527082224	No Hit
TATGAAAACTATGCCCTCGTGTACTCCTGCACCACCTTCTTCTGGCTCTTC	2594	0.20876742713059068	No Hit
CTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGCT	2335	0.18792287677329578	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGTGCCATT	1495	0.12031892966855556	No Hit
TCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	1464	0.11782402209683299	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCT	1315	0.10583236957468264	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATACG	25	3.8909882E-5	45.000004	1
AAGCGTA	20	7.0335076E-4	45.0	37
TAACCCG	20	7.0335076E-4	45.0	1
AACGCGA	20	7.0335076E-4	45.0	12
GCGTGAC	20	7.0335076E-4	45.0	45
TAAGCGT	20	7.0335076E-4	45.0	17
TATCGCG	45	3.8562575E-10	45.0	1
CGTACTA	30	2.1656451E-6	44.999996	33
CGGTATT	30	2.1656451E-6	44.999996	43
CTAACGG	100	0.0	42.750004	2
GCTAACG	95	0.0	42.63158	1
CGTTTTT	2215	0.0	41.139957	1
CGCATCG	45	1.9284926E-8	40.0	21
ATGCGCG	45	1.9284926E-8	40.0	1
TGAACGG	130	0.0	39.80769	2
CCCTCGT	340	0.0	39.705883	14
GTATGCG	80	0.0	39.375	1
GCCCTCG	350	0.0	39.214287	13
ACCGGTA	35	6.2486997E-6	38.571426	41
GTTTACG	35	6.2486997E-6	38.571426	1