SRR2934835.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934835.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1057005
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	6051	0.5724665446237245	No Hit
CCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	4997	0.4727508384539335	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGC	4493	0.42506894480158564	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3932	0.3719944560337936	No Hit
CTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGCT	3630	0.34342316261512484	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCG	3557	0.33651685659008235	No Hit
GAATCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTC	3509	0.3319757238612873	No Hit
TCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	2280	0.21570380461776434	No Hit
ACTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTGC	1766	0.16707584164691747	No Hit
CGCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTG	1337	0.1264894678833118	No Hit
ACCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTG	1235	0.11683956083462235	No Hit
GCCTGTCTCTTATACACATCTGACGCAATGGGGTTCGTATGCCGTCTTCTG	1064	0.10066177548829003	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGTT	25	3.8905913E-5	45.000004	40
CTGTCGA	30	2.165336E-6	45.000004	11
GTCGCGC	20	7.033028E-4	45.000004	26
GCCCAAT	20	7.033028E-4	45.000004	9
ACGCCCG	20	7.033028E-4	45.000004	5
GTCGACA	30	2.165336E-6	45.000004	13
CGACGGT	40	6.8139343E-9	45.000004	28
ACGTTAC	25	3.8905913E-5	45.000004	38
CGTGCGA	25	3.8905913E-5	45.000004	44
CGGCCTA	30	2.165336E-6	45.000004	45
GCGAACA	30	2.165336E-6	45.000004	32
ACACCGT	25	3.8905913E-5	45.000004	26
CGCATAC	20	7.033028E-4	45.000004	35
GGTCCGT	20	7.033028E-4	45.000004	9
CCGTGCG	25	3.8905913E-5	45.000004	43
TCGATTG	20	7.033028E-4	45.000004	1
TAACGGA	20	7.033028E-4	45.000004	3
TCGATAT	30	2.165336E-6	45.000004	43
GCGCAAC	30	2.165336E-6	45.000004	15
CTAACGG	30	2.165336E-6	45.000004	2