FastQCFastQC Report
Sat 14 Jan 2017
SRR2934833.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934833.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences730504
Sequences flagged as poor quality0
Sequence length51
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC37960.5196412339973497TruSeq Adapter, Index 20 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC35540.4865134208710698TruSeq Adapter, Index 20 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT29810.40807442532826654No Hit
CTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGCT25130.3440090677121549TruSeq Adapter, Index 27 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC13770.18849999452432842TruSeq Adapter, Index 20 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC11620.1590682597220549TruSeq Adapter, Index 27 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTG9870.13511219651090206TruSeq Adapter, Index 27 (95% over 21bp)

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCGCGG302.16441E-645.0000042
ACGCCCA302.16441E-645.00000422
CGTTGGC351.2111195E-745.00000421
TAAACGG302.16441E-645.0000042
ACGATGT302.16441E-645.00000429
GTCACGA302.16441E-645.00000442
GACGGTC600.045.00000429
GCTCGAT351.2111195E-745.00000419
CGATATA302.16441E-645.0000049
TAATCCG302.16441E-645.0000044
AACGTAA253.8894046E-545.010
CTAGACA406.8084773E-945.021
CCTTATC207.031597E-445.042
CGGAAAC207.031597E-445.016
AAATCCG207.031597E-445.045
CTCCGTT406.8084773E-945.022
ATTAGCG502.1827873E-1145.01
GATCGGA207.031597E-445.09
CGAAATA253.8894046E-545.023
GTACAAG1100.045.01