Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934833.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 730504 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC | 3796 | 0.5196412339973497 | TruSeq Adapter, Index 20 (95% over 21bp) |
GCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC | 3554 | 0.4865134208710698 | TruSeq Adapter, Index 20 (95% over 21bp) |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 2981 | 0.40807442532826654 | No Hit |
CTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGCT | 2513 | 0.3440090677121549 | TruSeq Adapter, Index 27 (95% over 23bp) |
TCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC | 1377 | 0.18849999452432842 | TruSeq Adapter, Index 20 (95% over 21bp) |
ACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC | 1162 | 0.1590682597220549 | TruSeq Adapter, Index 27 (95% over 22bp) |
CGCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTG | 987 | 0.13511219651090206 | TruSeq Adapter, Index 27 (95% over 21bp) |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCCGCGG | 30 | 2.16441E-6 | 45.000004 | 2 |
ACGCCCA | 30 | 2.16441E-6 | 45.000004 | 22 |
CGTTGGC | 35 | 1.2111195E-7 | 45.000004 | 21 |
TAAACGG | 30 | 2.16441E-6 | 45.000004 | 2 |
ACGATGT | 30 | 2.16441E-6 | 45.000004 | 29 |
GTCACGA | 30 | 2.16441E-6 | 45.000004 | 42 |
GACGGTC | 60 | 0.0 | 45.000004 | 29 |
GCTCGAT | 35 | 1.2111195E-7 | 45.000004 | 19 |
CGATATA | 30 | 2.16441E-6 | 45.000004 | 9 |
TAATCCG | 30 | 2.16441E-6 | 45.000004 | 4 |
AACGTAA | 25 | 3.8894046E-5 | 45.0 | 10 |
CTAGACA | 40 | 6.8084773E-9 | 45.0 | 21 |
CCTTATC | 20 | 7.031597E-4 | 45.0 | 42 |
CGGAAAC | 20 | 7.031597E-4 | 45.0 | 16 |
AAATCCG | 20 | 7.031597E-4 | 45.0 | 45 |
CTCCGTT | 40 | 6.8084773E-9 | 45.0 | 22 |
ATTAGCG | 50 | 2.1827873E-11 | 45.0 | 1 |
GATCGGA | 20 | 7.031597E-4 | 45.0 | 9 |
CGAAATA | 25 | 3.8894046E-5 | 45.0 | 23 |
GTACAAG | 110 | 0.0 | 45.0 | 1 |