SRR2934830.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934830.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1067476
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC	6366	0.5963600118410156	TruSeq Adapter, Index 20 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC	5118	0.4794487182850013	TruSeq Adapter, Index 20 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGCT	4185	0.39204628488134624	TruSeq Adapter, Index 22 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC	2958	0.27710224866882255	TruSeq Adapter, Index 20 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2556	0.2394433223791448	No Hit
CGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG	2335	0.21874028081193395	No Hit
ACTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTGC	1980	0.1854842638148305	TruSeq Adapter, Index 22 (95% over 21bp)
ACCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG	1467	0.13742697728098804	No Hit
GCCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG	1334	0.12496768077221408	TruSeq Adapter, Index 20 (95% over 21bp)
GGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG	1155	0.10819915389198445	TruSeq Adapter, Index 20 (95% over 21bp)
AGCTGTCTCTTATACACATCTGACGCTTAGCTCCTCGTATGCCGTCTTCTG	1092	0.10229738186151258	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGTACG	25	3.8906175E-5	45.000004	1
CTCGGTG	25	3.8906175E-5	45.000004	14
TTGACGT	50	2.1827873E-11	45.000004	1
CATGTCG	25	3.8906175E-5	45.000004	18
ACGGTAC	25	3.8906175E-5	45.000004	42
TATTTCG	20	7.0330605E-4	45.0	19
TTTAGCG	80	0.0	45.0	1
TCGCAAA	20	7.0330605E-4	45.0	31
TCACCGC	20	7.0330605E-4	45.0	1
ATCTACG	20	7.0330605E-4	45.0	38
GGCGTCG	20	7.0330605E-4	45.0	13
ATTACCG	20	7.0330605E-4	45.0	1
GCGTTAA	20	7.0330605E-4	45.0	9
TCTAGCG	20	7.0330605E-4	45.0	1
CGTTAAT	20	7.0330605E-4	45.0	36
TCTACGC	20	7.0330605E-4	45.0	39
GTTAACG	20	7.0330605E-4	45.0	1
AGACCGT	20	7.0330605E-4	45.0	26
TATTACG	20	7.0330605E-4	45.0	1
GACATCG	20	7.0330605E-4	45.0	27