SRR2934818.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934818.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	214628
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3990	1.859030508600928	No Hit
GCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	1119	0.5213672027880798	TruSeq Adapter, Index 27 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCC	1069	0.49807108112641413	No Hit
CCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	756	0.3522373595243864	TruSeq Adapter, Index 27 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	583	0.2716327785750228	No Hit
CTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGCT	556	0.25905287287772333	TruSeq Adapter, Index 20 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	507	0.23622267364929087	TruSeq Adapter, Index 27 (95% over 21bp)
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	474	0.2208472333525915	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	434	0.20221033602325886	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	391	0.18217567139422627	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCG	358	0.16680023109752687	No Hit
ACTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGCCGTCTTCTGC	317	0.14769741133496095	TruSeq Adapter, Index 20 (95% over 21bp)
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	282	0.1313901261717949	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGACCATTGTCGTATGC	269	0.1253331345397618	No Hit
TAAAGCGGGTATATATTATTTTATTAGTTCAATTTTAAAGACTATATATGT	256	0.11927614290772873	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	245	0.11415099614216226	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGGGTA	45	3.8198777E-10	45.000004	5
CTTCGGT	20	7.0204545E-4	45.0	24
GTACCGG	20	7.0204545E-4	45.0	2
CTTCCGG	20	7.0204545E-4	45.0	12
TAGCGAC	20	7.0204545E-4	45.0	30
TGAACGG	20	7.0204545E-4	45.0	2
CGACCGG	20	7.0204545E-4	45.0	33
TACGGGA	50	2.1827873E-11	45.0	4
GCGCAAG	20	7.0204545E-4	45.0	1
ACGGGCG	25	3.880173E-5	45.0	5
ATTCCAC	20	7.0204545E-4	45.0	4
CGGGCGA	25	3.880173E-5	45.0	6
GATGCGC	25	3.880173E-5	45.0	12
TTCGGTA	20	7.0204545E-4	45.0	25
CGACTGG	25	3.880173E-5	45.0	2
ATGCCAG	20	7.0204545E-4	45.0	10
TCGACTG	20	7.0204545E-4	45.0	1
TAGCTAG	20	7.0204545E-4	45.0	1
TCGGTAG	20	7.0204545E-4	45.0	26
AACGGGA	30	2.1572268E-6	44.999996	4