##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934815.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 199601 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.70378905917305 31.0 31.0 34.0 30.0 34.0 2 31.8131221787466 33.0 31.0 34.0 30.0 34.0 3 31.804815607136238 33.0 31.0 34.0 30.0 34.0 4 35.60723142669626 37.0 35.0 37.0 33.0 37.0 5 33.187604270519685 37.0 35.0 37.0 28.0 37.0 6 34.161802796579174 37.0 35.0 37.0 28.0 37.0 7 35.42986758583374 37.0 35.0 37.0 32.0 37.0 8 35.42146582431952 37.0 35.0 37.0 33.0 37.0 9 37.4360398995997 39.0 37.0 39.0 34.0 39.0 10 36.80853302338165 39.0 37.0 39.0 32.0 39.0 11 36.65944058396501 39.0 37.0 39.0 32.0 39.0 12 36.98787080225049 39.0 37.0 39.0 33.0 39.0 13 36.96115249923598 39.0 37.0 39.0 33.0 39.0 14 37.887159883968515 40.0 37.0 41.0 33.0 41.0 15 38.072514666760185 40.0 37.0 41.0 33.0 41.0 16 38.041372538213736 40.0 37.0 41.0 33.0 41.0 17 38.03795572166472 40.0 37.0 41.0 33.0 41.0 18 37.91334211752446 39.0 37.0 41.0 33.0 41.0 19 37.72541219733368 39.0 37.0 41.0 33.0 41.0 20 37.53807345654581 39.0 35.0 40.0 33.0 41.0 21 37.455228180219535 39.0 35.0 40.0 33.0 41.0 22 37.421049994739505 39.0 35.0 40.0 33.0 41.0 23 37.1961062319327 39.0 35.0 40.0 33.0 41.0 24 36.930521390173396 39.0 35.0 40.0 32.0 41.0 25 36.72225590052154 38.0 35.0 40.0 31.0 41.0 26 36.974489105766004 39.0 35.0 40.0 32.0 41.0 27 36.93642817420754 39.0 35.0 40.0 32.0 41.0 28 36.9611925791955 39.0 35.0 40.0 32.0 41.0 29 37.017214342613514 39.0 35.0 40.0 33.0 41.0 30 36.77877365343861 39.0 35.0 40.0 32.0 41.0 31 36.53376987089243 39.0 35.0 40.0 31.0 41.0 32 36.25108090640828 39.0 35.0 40.0 30.0 41.0 33 36.111617677266146 39.0 35.0 40.0 30.0 41.0 34 35.922740868031724 39.0 35.0 40.0 29.0 41.0 35 35.62784254587903 39.0 35.0 40.0 27.0 41.0 36 35.49990230509867 38.0 35.0 40.0 26.0 41.0 37 35.4318715838097 38.0 35.0 40.0 25.0 41.0 38 35.39877555723669 38.0 35.0 40.0 25.0 41.0 39 35.39079463529742 38.0 35.0 40.0 25.0 41.0 40 35.26395659340384 38.0 35.0 40.0 24.0 41.0 41 35.01946383034153 38.0 35.0 40.0 24.0 41.0 42 35.060490678904415 38.0 35.0 40.0 23.0 41.0 43 35.03393770572292 38.0 35.0 40.0 23.0 41.0 44 35.02103696875266 38.0 35.0 40.0 23.0 41.0 45 35.0464025731334 38.0 35.0 40.0 23.0 41.0 46 34.93058652010762 38.0 35.0 40.0 23.0 41.0 47 34.81196486991548 38.0 35.0 40.0 23.0 41.0 48 34.80411420784465 38.0 35.0 40.0 23.0 41.0 49 34.81975541204704 38.0 34.0 40.0 23.0 41.0 50 34.77868347352969 38.0 34.0 40.0 23.0 41.0 51 33.763282749084425 37.0 33.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 5.0 11 2.0 12 6.0 13 9.0 14 12.0 15 18.0 16 25.0 17 45.0 18 72.0 19 167.0 20 272.0 21 461.0 22 738.0 23 1053.0 24 1558.0 25 2215.0 26 3190.0 27 3657.0 28 3709.0 29 3592.0 30 3692.0 31 4619.0 32 5833.0 33 7914.0 34 12415.0 35 17183.0 36 20875.0 37 28327.0 38 43390.0 39 34535.0 40 10.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.30043937655623 23.960300800096192 24.37262338365038 19.366636439697196 2 37.70171492126793 22.864614906738943 23.972825787445956 15.46084438454717 3 26.51489721995381 22.983852786308688 36.423665212098136 14.077584781639372 4 24.4668112885206 24.687251065876424 34.79742085460494 16.04851679099804 5 18.445298370248647 32.432202243475736 32.919674751128504 16.202824635147117 6 21.465323320023447 31.157158531269886 34.00083165916003 13.376686489546646 7 66.92601740472243 6.552572381901895 21.079052710156763 5.442357503218922 8 65.40698693894319 5.64676529676705 21.3095124773924 7.63673528689736 9 60.37745301877246 7.574110350148547 23.760903001487968 8.287533629591035 10 29.349051357458126 24.24386651369482 31.49683618819545 14.9102459406516 11 19.77044203185355 24.81250093937405 35.17767947054373 20.239377558228668 12 19.073551735712748 21.70931007359683 41.21271937515343 18.004418815536997 13 19.081567727616594 23.216316551520283 41.564922019428764 16.13719370143436 14 14.561049293340215 26.56549816884685 39.61302799084173 19.26042454697121 15 13.130194738503315 24.886147864990658 43.11401245484742 18.86964494165861 16 13.33309953356947 25.74285699971443 40.2007003972926 20.7233430694235 17 13.823077038692192 25.50939123551485 36.63508699856213 24.032444727230825 18 13.793017069052759 25.10358164538254 42.21572036212243 18.887680923442268 19 14.874674976578273 25.83203490964474 39.46072414466861 19.83256596910837 20 15.69531214773473 28.755366957079374 37.87355774770668 17.67576314747922 21 15.083090766078328 26.82251090926398 40.21272438514837 17.88167393950932 22 13.430794434897619 26.65517707827115 36.15763448078918 23.756394006042054 23 13.4583494070671 25.079032670177003 37.83698478464537 23.62563313811053 24 16.35262348385028 24.470819284472523 37.209232418675256 21.96732481300194 25 13.1572487111788 27.394652331401144 35.2007254472673 24.247373510152755 26 12.532001342678644 29.741333961252696 36.782380849795345 20.944283846273315 27 14.723373129393138 27.64364907991443 36.7949058371451 20.838071953547328 28 11.520984363805793 28.026913692817168 36.095009544040366 24.35709239933668 29 13.297027570002154 27.542948181622336 36.966247664089856 22.193776584285647 30 18.610127203771523 27.383129343039364 32.51486715998417 21.491876293204946 31 16.444306391250546 33.01436365549271 30.170690527602567 20.37063942565418 32 16.22086061693078 29.772395929880112 32.47929619591084 21.527447257278272 33 21.023942765817807 26.396661339372045 30.424196271561765 22.155199623248382 34 18.648203165314804 26.52942620527953 32.042424637151115 22.779945992254547 35 17.165745662596883 27.621104102684857 32.37358530267884 22.83956493203942 36 21.690272092825186 28.196752521279954 28.854063857395506 21.258911528499354 37 18.73187008081122 28.83151888016593 33.31446235239303 19.122148686629824 38 18.873151938116543 27.671204052083908 33.03340163626435 20.4222423735352 39 25.81950992229498 23.69527206777521 31.750842931648638 18.73437507828117 40 25.61660512722882 23.138661629951756 32.505849169092336 18.738884073727085 41 20.749896042605 25.976322763914006 30.425198270549746 22.84858292293125 42 22.381651394532092 25.30999343690663 31.206757481174947 21.101597687386338 43 22.228345549370996 24.218315539501305 32.43721223841564 21.11612667271206 44 20.251902545578428 24.81250093937405 29.857064844364505 25.078531670683013 45 23.454792310659766 22.452292323184754 29.80846789344743 24.284447472708052 46 24.367112389216487 22.96782080250099 32.590017084082746 20.07504972419978 47 19.640182163416014 24.653684099779056 35.856533784900876 19.849599951904047 48 19.74288705968407 21.800992980997087 35.981783658398506 22.474336300920335 49 23.386155379983066 19.80150400048096 36.59600903803087 20.216331581505102 50 22.01842676138897 18.26894654836399 35.10102654796319 24.61160014228386 51 20.083566715597616 18.469847345454184 31.93921874138907 29.50736719755913 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1604.0 1 2100.5 2 2597.0 3 4676.0 4 6755.0 5 4471.0 6 2187.0 7 2190.0 8 2193.0 9 2216.5 10 2240.0 11 2333.0 12 2426.0 13 2358.5 14 2291.0 15 2218.5 16 2146.0 17 2133.5 18 2121.0 19 1886.5 20 1652.0 21 1649.0 22 1646.0 23 1600.5 24 1555.0 25 1725.5 26 2017.5 27 2139.0 28 2212.5 29 2286.0 30 2454.5 31 2623.0 32 2966.5 33 3310.0 34 3453.5 35 3597.0 36 4043.0 37 4489.0 38 4906.0 39 5323.0 40 6235.0 41 7147.0 42 8769.0 43 10391.0 44 12131.0 45 13871.0 46 16924.5 47 19978.0 48 23606.5 49 27235.0 50 26154.5 51 25074.0 52 19660.0 53 14246.0 54 10991.0 55 7736.0 56 6104.0 57 4472.0 58 3987.0 59 3502.0 60 3244.0 61 2986.0 62 2523.0 63 2060.0 64 1767.0 65 1474.0 66 1185.5 67 897.0 68 752.5 69 608.0 70 477.5 71 347.0 72 301.0 73 255.0 74 173.0 75 83.5 76 76.0 77 56.5 78 37.0 79 26.5 80 16.0 81 16.5 82 17.0 83 10.0 84 3.0 85 3.0 86 3.0 87 3.0 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 199601.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.307383229542936 #Duplication Level Percentage of deduplicated Percentage of total 1 73.38310072487288 33.981793678388385 2 10.777885967759387 9.981913918266942 3 4.682462403981392 6.504977429972795 4 2.6766201449745752 4.957890992530097 5 1.9506653683868873 4.516510438324457 6 1.4627285513361463 4.064107895251025 7 1.1240939089040356 3.6437693197929866 8 0.9109596451368603 3.3747325915200825 9 0.6469760900140646 2.6963792766569306 >10 2.2687439143135344 15.158240690176902 >50 0.06924158822893 2.1547988236531883 >100 0.03894839337877313 3.7990791629300453 >500 0.0032456994482310936 1.293079693989509 >1k 0.004327599264308125 3.8727260885466506 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3853 1.9303510503454393 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCC 1383 0.6928823001888769 No Hit CCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGC 1318 0.6603173330794936 TruSeq Adapter, Index 14 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGC 1176 0.589175404932841 TruSeq Adapter, Index 14 (95% over 21bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 997 0.49949649550853953 No Hit CTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGCT 926 0.4639255314352132 TruSeq Adapter, Index 21 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGC 658 0.3296576670457563 TruSeq Adapter, Index 14 (95% over 21bp) CGTTTTTTTCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCG 449 0.22494877280173947 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 444 0.2224437753317869 No Hit ACTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGC 426 0.21342578443995772 TruSeq Adapter, Index 21 (95% over 22bp) CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 399 0.19989879810221392 No Hit TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 398 0.19939779860822343 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 360 0.180359817836584 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGC 316 0.1583158401010015 No Hit GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 297 0.14879684971518178 No Hit ACCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTG 286 0.14328585528128615 TruSeq Adapter, Index 21 (95% over 21bp) CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 265 0.13276486590748543 No Hit AGCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTG 260 0.13025986843753287 TruSeq Adapter, Index 21 (95% over 21bp) CGTTTTTCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTC 247 0.12374687501565623 No Hit CGTTTTTTCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGT 241 0.12074087805171317 No Hit CGCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTG 227 0.11372688513584601 TruSeq Adapter, Index 21 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTG 223 0.11172288715988396 No Hit GGCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTG 208 0.1042078947500263 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.49097950411070085 0.0 2 0.0 0.0 0.0 2.3942765817806526 0.0 3 0.0 0.0 0.0 3.3346526320008416 0.0 4 0.0 0.0 0.0 4.476931478299207 0.0 5 0.0 0.0 0.0 7.444351481205004 0.0 6 0.0 0.0 0.0 9.119192789615283 0.0 7 0.0 0.0 0.0 10.821088070701048 0.0 8 0.0 0.0 0.0 13.206346661589873 0.0 9 0.0 0.0 0.0 14.170269688027615 0.0 10 0.0 0.0 0.0 16.412743423129143 0.0 11 0.0 0.0 0.0 20.969834820466833 0.0 12 0.0 0.0 0.0 23.805491956453125 0.0 13 0.0 0.0 0.0 24.984343765812795 0.0 14 0.0 0.0 0.0 25.432237313440314 0.0 15 0.0 0.0 0.0 26.358585377828767 0.0 16 0.0 0.0 0.0 28.461781253600932 0.0 17 0.0 0.0 0.0 30.93872275189002 0.0 18 0.0 0.0 0.0 33.36756829875602 0.0 19 0.0 0.0 0.0 34.92868272203045 0.0 20 0.0 0.0 0.0 36.37857525763899 0.0 21 0.0 0.0 0.0 38.11403750482212 0.0 22 0.0 0.0 0.0 39.78286681930451 0.0 23 0.0 0.0 0.0 41.28035430684215 0.0 24 0.0 0.0 0.0 42.24978832771379 0.0 25 0.0 0.0 0.0 42.97623759400003 0.0 26 0.0 0.0 0.0 43.612506951367976 0.0 27 5.009994939905111E-4 0.0 0.0 44.13454842410609 0.0 28 5.009994939905111E-4 0.0 0.0 44.65107890241031 0.0 29 5.009994939905111E-4 0.0 0.0 45.188150359968134 0.0 30 5.009994939905111E-4 0.0 0.0 45.722716820056014 0.0 31 5.009994939905111E-4 0.0 0.0 46.18664235149122 0.0 32 5.009994939905111E-4 0.0 0.0 46.60096893302138 0.0 33 5.009994939905111E-4 0.0 0.0 46.98723954288806 0.0 34 5.009994939905111E-4 0.0 0.0 47.33693718969344 0.0 35 5.009994939905111E-4 0.0 0.0 47.726213796524064 0.0 36 5.009994939905111E-4 0.0 0.0 48.01579150405058 0.0 37 5.009994939905111E-4 0.0 0.0 48.341942174638405 0.0 38 5.009994939905111E-4 0.0 0.0 48.63202088165891 0.0 39 5.009994939905111E-4 0.0 0.0 48.949153561354905 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTATGG 20 7.019268E-4 45.000004 2 CGAAAGG 20 7.019268E-4 45.000004 2 TACGGGA 85 0.0 45.000004 4 CTGTTAA 20 7.019268E-4 45.000004 36 GCTAACG 20 7.019268E-4 45.000004 1 TGCGTGG 20 7.019268E-4 45.000004 2 GACTAGG 20 7.019268E-4 45.000004 2 ATGGGCA 90 0.0 45.0 5 GTACAGG 35 1.2051896E-7 45.0 2 TCGATAG 35 1.2051896E-7 45.0 1 TCAGGGT 25 3.8791914E-5 45.0 4 CGTTATT 90 0.0 45.0 1 CGTTAGG 25 3.8791914E-5 45.0 2 CTAACGG 25 3.8791914E-5 45.0 2 GGGACAC 35 1.2051896E-7 45.0 7 CGGGATG 35 1.2051896E-7 45.0 6 GACGGGA 45 3.8198777E-10 45.0 4 AGGGCCC 35 1.2051896E-7 45.0 6 GCGTAAG 25 3.8791914E-5 45.0 1 GTACGGG 45 3.8198777E-10 45.0 3 >>END_MODULE