##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934813.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 170294 Sequences flagged as poor quality 0 Sequence length 51 %GC 40 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.74889309077243 31.0 31.0 34.0 30.0 34.0 2 31.84266621255006 33.0 31.0 34.0 30.0 34.0 3 31.841550495026247 33.0 31.0 34.0 30.0 34.0 4 35.63141977991004 37.0 35.0 37.0 33.0 37.0 5 33.016718146264694 37.0 35.0 37.0 28.0 37.0 6 34.068645988701896 37.0 35.0 37.0 27.0 37.0 7 35.39053049432159 37.0 35.0 37.0 32.0 37.0 8 35.30950004110538 37.0 35.0 37.0 33.0 37.0 9 37.37529801402281 39.0 37.0 39.0 34.0 39.0 10 36.9199971813452 39.0 37.0 39.0 33.0 39.0 11 36.7475131243614 39.0 37.0 39.0 32.0 39.0 12 37.01925493558199 39.0 37.0 39.0 33.0 39.0 13 36.92521756491714 39.0 37.0 39.0 33.0 39.0 14 37.872473487028316 40.0 37.0 41.0 33.0 41.0 15 38.06155237412945 40.0 37.0 41.0 33.0 41.0 16 38.0659154168673 40.0 37.0 41.0 33.0 41.0 17 38.049185526207616 40.0 37.0 41.0 33.0 41.0 18 37.93028527135424 39.0 37.0 41.0 34.0 41.0 19 37.72616768647163 39.0 36.0 41.0 34.0 41.0 20 37.51376443092534 39.0 35.0 40.0 33.0 41.0 21 37.40615641185244 39.0 35.0 40.0 33.0 41.0 22 37.36105206290298 39.0 35.0 40.0 33.0 41.0 23 37.1419662466088 39.0 35.0 40.0 33.0 41.0 24 36.866806816446854 39.0 35.0 40.0 32.0 41.0 25 36.66502636616675 38.0 35.0 40.0 32.0 41.0 26 36.918276627479536 39.0 35.0 40.0 32.0 41.0 27 36.80476117772793 39.0 35.0 40.0 32.0 41.0 28 36.90733085135119 39.0 35.0 40.0 32.0 41.0 29 36.93086074670863 39.0 35.0 40.0 33.0 41.0 30 36.58238693083726 38.0 35.0 40.0 31.0 41.0 31 36.48342865867265 39.0 35.0 40.0 31.0 41.0 32 36.237225034352356 39.0 35.0 40.0 30.0 41.0 33 35.98398651743455 39.0 35.0 40.0 30.0 41.0 34 35.78190658508227 39.0 35.0 40.0 29.0 41.0 35 35.52313645812536 39.0 35.0 40.0 25.0 41.0 36 35.267073414213066 38.0 35.0 40.0 24.0 41.0 37 35.15480287033014 38.0 35.0 40.0 24.0 41.0 38 35.10955171644333 38.0 35.0 40.0 23.0 41.0 39 35.01438688385968 38.0 35.0 40.0 23.0 41.0 40 34.86096397994057 38.0 35.0 40.0 22.0 41.0 41 34.81349313540113 38.0 35.0 40.0 22.0 41.0 42 34.81138501650088 38.0 35.0 40.0 21.0 41.0 43 34.62955829330452 38.0 35.0 40.0 21.0 41.0 44 34.549714023982055 38.0 34.0 40.0 20.0 41.0 45 34.599604213888924 38.0 34.0 40.0 20.0 41.0 46 34.51406391299752 38.0 34.0 40.0 20.0 41.0 47 34.45800204352473 38.0 34.0 40.0 20.0 41.0 48 34.4035726449552 38.0 34.0 40.0 20.0 41.0 49 34.3829142541722 38.0 34.0 40.0 20.0 41.0 50 34.268424019636626 38.0 34.0 40.0 20.0 41.0 51 33.394964003429365 37.0 33.0 40.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 2.0 10 4.0 11 5.0 12 4.0 13 2.0 14 9.0 15 12.0 16 26.0 17 35.0 18 78.0 19 149.0 20 263.0 21 422.0 22 613.0 23 948.0 24 1426.0 25 2182.0 26 3030.0 27 3594.0 28 3452.0 29 3431.0 30 3583.0 31 4052.0 32 4955.0 33 6689.0 34 10670.0 35 14915.0 36 17226.0 37 23065.0 38 35499.0 39 29941.0 40 10.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.23384264859595 22.031897776786032 22.96557717829166 17.768682396326355 2 37.2767096903003 24.65442117749304 23.26975700846771 14.799112123738944 3 27.860641009078417 23.27739086520958 35.35062891235158 13.511339213360424 4 24.78184786310733 25.53818690030183 34.64831409209955 15.031651144491292 5 19.28136047071535 33.45156024287409 31.77504785840957 15.492031428000985 6 20.3395304590884 34.272493452499795 33.33822683124479 12.049749257167017 7 64.16139147591812 8.551093990393085 21.71362467262499 5.573889861063807 8 61.14014586538574 9.074894006835239 22.441777161849508 7.343182965929509 9 55.767672378357425 10.654515132652943 25.363195414988198 8.214617074001433 10 29.498984109833582 27.204129329277606 30.600021139910975 12.696865420977838 11 22.427683887864518 23.536941994433157 35.04644908217553 18.988925035526794 12 20.797561863600595 22.284989488766485 40.115329958777174 16.802118688855742 13 20.004815201944872 24.51055233889626 40.30793803657205 15.17669442258682 14 14.66463880113216 28.326306270332484 38.73301466874934 18.276040259786015 15 13.427366789199855 25.826511797244766 43.6721199807392 17.07400143281619 16 13.49313540112981 26.711451959552303 39.9597167251929 19.835695914124983 17 14.21659013235933 25.728446099099205 37.03183905481109 23.023124713730372 18 13.721563883636534 26.448964731581853 41.557541663241224 18.271929721540396 19 16.331168449857305 26.248135577295734 38.89508731957673 18.525608653270226 20 16.586609040835263 28.34627174181122 38.30493147145525 16.76218774589827 21 15.82615946539514 27.075528204164563 39.72717770444056 17.371134625999744 22 12.646364522531622 27.988654914442083 36.22323745992225 23.141743103104044 23 14.153757619176249 25.790691392532917 37.84690006694305 22.208650921347786 24 15.632376948101518 25.64095035644239 37.75940432428623 20.967268371169858 25 13.61410266950098 27.59991544035609 36.50451571987269 22.28146617027024 26 12.079110244635748 29.771454073543403 39.00900795095541 19.140427730865444 27 15.523741294467216 29.073249791536988 37.12520699496166 18.277801919034143 28 11.542978613456729 27.258740765969442 38.53747049220759 22.660810128366236 29 14.168438112910614 24.909861768470996 39.70721223296182 21.21448788565657 30 15.903085252563216 31.161990440062482 34.00002348878998 18.934900818584328 31 16.52671262639905 30.644649840863448 31.51373506993787 21.31490246279963 32 17.192619822189858 29.861885914947088 33.05988467004122 19.885609592821826 33 18.913760907606843 30.050970674245715 30.278811937003063 20.756456481144372 34 17.295383278330416 26.870588511632825 33.349971226232284 22.48405698380448 35 19.049995889461755 26.625130656394237 33.431007551645976 20.89386590249803 36 20.50395198891329 31.063337522167544 30.102058792441305 18.330651696477858 37 20.318390548110916 28.241159406673166 31.957085980715703 19.483364064500215 38 18.632482647656406 30.019848027528862 30.26119534452183 21.086473980292904 39 23.073038392427215 26.480674598048083 31.696360411993375 18.749926597531328 40 24.563402116339976 25.750760449575438 32.100954819312484 17.5848826147721 41 24.02139828766721 26.423714282358745 28.75908722562157 20.79580020435247 42 23.313798489670802 25.702608430126723 31.290591565175518 19.693001515026953 43 22.591518197940033 24.628583508520556 32.52199137961408 20.257906913925332 44 18.75932211352132 25.357910437243824 31.675807720765263 24.206959728469588 45 21.28847757407777 24.39839336676571 31.33052250813299 22.982606551023522 46 22.86222650240173 26.823610931682857 31.864305260314513 18.449857305600904 47 20.752933162648127 25.34146828426134 34.607208709643324 19.298389843447215 48 20.633140333775707 23.761259938694256 33.61656899244835 21.989030735081684 49 22.923884576086063 21.586785206760073 35.50330604718898 19.98602416996488 50 20.377112523048375 21.436456950920174 34.17618941360236 24.010241112429092 51 20.664850200241936 20.546231810868264 30.59473616216661 28.194181826723195 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1213.0 1 2034.0 2 2855.0 3 4750.0 4 6645.0 5 4420.0 6 2195.0 7 2226.5 8 2258.0 9 2189.0 10 2120.0 11 2212.5 12 2305.0 13 2306.0 14 2307.0 15 2070.5 16 1834.0 17 1743.5 18 1653.0 19 1710.5 20 1768.0 21 1948.0 22 2128.0 23 1890.5 24 1653.0 25 2265.5 26 2796.5 27 2715.0 28 2573.5 29 2432.0 30 2533.0 31 2634.0 32 2872.0 33 3110.0 34 3122.0 35 3134.0 36 3352.5 37 3571.0 38 3941.5 39 4312.0 40 4938.0 41 5564.0 42 7133.0 43 8702.0 44 9986.0 45 11270.0 46 13611.5 47 15953.0 48 18174.5 49 20396.0 50 19732.5 51 19069.0 52 15010.5 53 10952.0 54 8473.0 55 5994.0 56 4844.5 57 3695.0 58 3336.0 59 2977.0 60 3017.5 61 3058.0 62 2612.0 63 2166.0 64 1960.5 65 1755.0 66 1462.0 67 1169.0 68 970.5 69 772.0 70 601.5 71 431.0 72 356.0 73 281.0 74 228.5 75 141.5 76 107.0 77 67.0 78 27.0 79 31.5 80 36.0 81 26.5 82 17.0 83 9.0 84 1.0 85 2.0 86 3.0 87 2.0 88 1.0 89 1.0 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 170294.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.82545480169589 #Duplication Level Percentage of deduplicated Percentage of total 1 74.13439606345626 33.97242416056937 2 10.558958456136754 9.677381469693588 3 4.469617365898665 6.144667457455929 4 2.5910453881442375 4.749433332941853 5 1.8311591788615804 4.195685109281595 6 1.3198698070170942 3.629018051135096 7 1.0597401266049873 3.399415129129623 8 0.8406161101002075 3.0817292447179585 9 0.6637791844998591 2.7376184715844363 >10 2.394987057587329 16.416315313516623 >50 0.08841846280017428 2.7769621947925356 >100 0.03716138291601527 3.4640093015608304 >500 0.0051257079884159005 1.6583085722339013 >1k 0.0051257079884159005 4.097032191386661 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3580 2.102246702761107 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCC 1187 0.6970298425076632 No Hit GCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC 1118 0.656511679800815 No Hit GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA 1092 0.6412439663170751 No Hit CCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC 820 0.481520194487181 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 794 0.46625248100344113 No Hit CTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGCT 650 0.38169283709349716 Illumina Single End Adapter 2 (95% over 21bp) GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 560 0.3288430596497821 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 473 0.277754941454191 No Hit TCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC 440 0.2583766897248288 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 372 0.2184457467673553 No Hit GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 316 0.18556144080237705 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCG 305 0.17910202355925633 No Hit ACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC 302 0.1773403643111325 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 272 0.1597237718298942 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGC 234 0.13740942135365897 No Hit CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 230 0.13506054235616052 No Hit AAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG 216 0.12683946586491596 No Hit GCCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTG 207 0.12155448812054447 No Hit AAGGAGGGAACACTAGTATATTTATATTTTAATCTATTTTAGTTTTTACTT 193 0.11333341162929993 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4010710888228593 0.0 2 0.0 0.0 0.0 2.074060154791126 0.0 3 0.0 0.0 0.0 2.798689325519396 0.0 4 0.0 0.0 0.0 3.720624332037535 0.0 5 0.0 0.0 0.0 6.219831585375879 0.0 6 0.0 0.0 0.0 7.619763467884952 0.0 7 0.0 0.0 0.0 9.189989077712662 0.0 8 0.0 0.0 0.0 11.511855966739873 0.0 9 0.0 0.0 0.0 12.408540524034905 0.0 10 0.0 0.0 0.0 14.826124232210178 0.0 11 0.0 0.0 0.0 18.863260009160626 0.0 12 0.0 0.0 0.0 21.563883636534463 0.0 13 0.0 0.0 0.0 22.626164163153135 0.0 14 0.0 0.0 0.0 23.069515073930965 0.0 15 0.0 0.0 0.0 23.9638507522285 0.0 16 0.0 0.0 0.0 25.858221663710992 0.0 17 0.0 0.0 0.0 28.103162765570133 0.0 18 0.0 0.0 0.0 30.55715409820663 0.0 19 0.0 0.0 0.0 31.939469388234464 0.0 20 0.0 0.0 0.0 33.19083467415176 0.0 21 0.0 0.0 0.0 34.769281360470714 0.0 22 0.0 0.0 0.0 36.276087237365964 0.0 23 0.0 0.0 0.0 37.61847158443633 0.0 24 0.0 0.0 0.0 38.56448260067883 0.0 25 0.0 0.0 0.0 39.298507287397086 0.0 26 0.0 0.0 0.0 39.92330910073168 0.0 27 0.0 0.0 0.0 40.445347457925706 0.0 28 0.0 0.0 0.0 40.932152630157255 0.0 29 0.0 0.0 0.0 41.43598717512067 0.0 30 0.0 0.0 0.0 41.89460579938225 0.0 31 0.0 0.0 0.0 42.31975289792946 0.0 32 0.0 0.0 0.0 42.709079591764834 0.0 33 0.0 0.0 0.0 43.05612646364523 0.0 34 5.87219749374611E-4 0.0 0.0 43.38790562204188 0.0 35 5.87219749374611E-4 0.0 0.0 43.76724958013788 0.0 36 5.87219749374611E-4 0.0 0.0 44.102552057030785 0.0 37 5.87219749374611E-4 0.0 0.0 44.409080766204326 0.0 38 5.87219749374611E-4 0.0 0.0 44.69975454214476 0.0 39 5.87219749374611E-4 0.0 0.0 44.92877024440086 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTGTTCG 25 3.8767706E-5 45.000004 10 GTCATCG 25 3.8767706E-5 45.000004 34 GAGTACG 25 3.8767706E-5 45.000004 1 TCCTCTA 25 3.8767706E-5 45.000004 21 TACGGGC 25 3.8767706E-5 45.000004 4 ACGGGAC 25 3.8767706E-5 45.000004 5 CCCACGG 25 3.8767706E-5 45.000004 28 GTAGACC 25 3.8767706E-5 45.000004 16 CGTAGAC 25 3.8767706E-5 45.000004 15 TGTTCGT 25 3.8767706E-5 45.000004 11 TCGTAGA 25 3.8767706E-5 45.000004 14 TCATCTC 25 3.8767706E-5 45.000004 16 TCATCGA 25 3.8767706E-5 45.000004 35 CATAAGG 25 3.8767706E-5 45.000004 2 CATCGAT 25 3.8767706E-5 45.000004 36 GTATAAG 25 3.8767706E-5 45.000004 1 TAAGGTA 25 3.8767706E-5 45.000004 4 TGCTAAG 25 3.8767706E-5 45.000004 1 TCATACA 25 3.8767706E-5 45.000004 8 AGTACGG 50 2.1827873E-11 45.000004 2 >>END_MODULE