SRR2934811.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934811.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	228168
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4841	2.1216822692051474	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCC	1338	0.5864100136741349	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	1088	0.47684162546895276	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	1013	0.443971109007398	TruSeq Adapter, Index 14 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	901	0.39488447109147645	No Hit
TAAACAGGGAGATGGATATAAATATTTTTTTTATTTTTAAATATTGTACTA	834	0.36552014305248764	No Hit
CTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGCT	804	0.3523719364678658	TruSeq Adapter, Index 15 (95% over 23bp)
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	472	0.2068651169313839	No Hit
TCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	452	0.1980996458749693	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCG	439	0.19240208968829983	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	403	0.17662424178675362	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	342	0.14988955506468918	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	325	0.1424389046667368	No Hit
ACTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGCCGTCTTCTGC	313	0.13717962203288805	TruSeq Adapter, Index 15 (95% over 22bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	312	0.1367413484800673	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTAAGACTCGTATGC	300	0.13148206584621858	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATGG	25	3.8809478E-5	45.000004	2
GGCCGGT	25	3.8809478E-5	45.000004	9
TTGACGG	25	3.8809478E-5	45.000004	2
GCGGGCA	25	3.8809478E-5	45.000004	5
TTGCACG	25	3.8809478E-5	45.000004	1
TCGCATG	20	7.021391E-4	45.0	1
CCGGGAT	35	1.2062083E-7	45.0	5
GCGAATG	20	7.021391E-4	45.0	1
ACGTTAG	20	7.021391E-4	45.0	1
AGGACGG	20	7.021391E-4	45.0	2
TCGGGCA	20	7.021391E-4	45.0	5
GTAATGG	35	1.2062083E-7	45.0	2
CAGGGTA	75	0.0	45.0	5
ATCCGGG	20	7.021391E-4	45.0	3
GGGACGA	20	7.021391E-4	45.0	7
GCGATTG	20	7.021391E-4	45.0	9
CAGTGCG	20	7.021391E-4	45.0	1
TAGATTG	20	7.021391E-4	45.0	1
CGTAAGG	35	1.2062083E-7	45.0	2
GGGTTAC	20	7.021391E-4	45.0	8