SRR2934804.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934804.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	152505
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3607	2.3651683551358973	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCC	1059	0.6944034621815678	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	961	0.6301432739910167	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	936	0.6137503688403658	No Hit
CCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTGC	898	0.5888331530113766	No Hit
GCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTGC	745	0.4885085734893938	No Hit
CTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTGCT	536	0.35146388642995313	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	512	0.33572669748532835	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	504	0.3304809678371201	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	415	0.2721222255008033	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	397	0.2603193337923347	No Hit
TTAGTTTTTTTTTTTATATTTGTTTTACTATTACTAGTATAACTATTTTAT	357	0.23409068555129342	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	339	0.22228779384282482	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCG	339	0.22228779384282482	No Hit
TCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTGC	338	0.22163207763679882	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGC	258	0.16917478115471624	No Hit
ACTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTGC	256	0.16786334874266418	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	246	0.16130618668240387	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	244	0.15999475427035179	No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	179	0.11737320087865971	No Hit
CGCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTG	163	0.1068817415822432	No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	158	0.10360316055211304	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGAG	20	7.014034E-4	45.000004	14
TCGGGAG	20	7.014034E-4	45.000004	45
ACACAAC	20	7.014034E-4	45.000004	11
AGGGTCC	20	7.014034E-4	45.000004	6
AGGGTAC	40	6.7484507E-9	45.000004	6
TAGTTGG	20	7.014034E-4	45.000004	2
TACATGG	20	7.014034E-4	45.000004	2
GGCCATG	20	7.014034E-4	45.000004	1
TACATAG	20	7.014034E-4	45.000004	1
AATGCTT	20	7.014034E-4	45.000004	31
GGGGTTA	20	7.014034E-4	45.000004	7
GCGGGTG	20	7.014034E-4	45.000004	5
TATTAGG	20	7.014034E-4	45.000004	1
CGGGAAC	20	7.014034E-4	45.000004	6
TCGTAGG	20	7.014034E-4	45.000004	2
ACGAGCG	20	7.014034E-4	45.000004	16
GATTAGG	20	7.014034E-4	45.000004	2
TCGAAGG	20	7.014034E-4	45.000004	2
TAGTATG	20	7.014034E-4	45.000004	1
CTAGCGG	20	7.014034E-4	45.000004	2

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content