FastQCFastQC Report
Sat 14 Jan 2017
SRR2934804.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934804.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences152505
Sequences flagged as poor quality0
Sequence length51
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36072.3651683551358973No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCC10590.6944034621815678No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA9610.6301432739910167No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA9360.6137503688403658No Hit
CCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTGC8980.5888331530113766No Hit
GCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTGC7450.4885085734893938No Hit
CTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTGCT5360.35146388642995313No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5120.33572669748532835No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5040.3304809678371201No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG4150.2721222255008033No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3970.2603193337923347No Hit
TTAGTTTTTTTTTTTATATTTGTTTTACTATTACTAGTATAACTATTTTAT3570.23409068555129342No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3390.22228779384282482No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCG3390.22228779384282482No Hit
TCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTGC3380.22163207763679882No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGC2580.16917478115471624No Hit
ACTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTGC2560.16786334874266418No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2460.16130618668240387No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2440.15999475427035179No Hit
AAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG1790.11737320087865971No Hit
CGCTGTCTCTTATACACATCTGACGCTCGTCGATTCGTATGCCGTCTTCTG1630.1068817415822432No Hit
AAGGAAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG1580.10360316055211304No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAACGAG207.014034E-445.00000414
TCGGGAG207.014034E-445.00000445
ACACAAC207.014034E-445.00000411
AGGGTCC207.014034E-445.0000046
AGGGTAC406.7484507E-945.0000046
TAGTTGG207.014034E-445.0000042
TACATGG207.014034E-445.0000042
GGCCATG207.014034E-445.0000041
TACATAG207.014034E-445.0000041
AATGCTT207.014034E-445.00000431
GGGGTTA207.014034E-445.0000047
GCGGGTG207.014034E-445.0000045
TATTAGG207.014034E-445.0000041
CGGGAAC207.014034E-445.0000046
TCGTAGG207.014034E-445.0000042
ACGAGCG207.014034E-445.00000416
GATTAGG207.014034E-445.0000042
TCGAAGG207.014034E-445.0000042
TAGTATG207.014034E-445.0000041
CTAGCGG207.014034E-445.0000042