SRR2934801.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934801.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	121585
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3351	2.7560965579635646	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCC	943	0.7755890940494304	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	879	0.7229510219188222	No Hit
GCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGC	688	0.5658592754040384	No Hit
CCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGC	665	0.546942468232101	No Hit
CTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGCT	415	0.34132499897191265	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	360	0.2960891557346712	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	333	0.27388246905457087	No Hit
TCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGC	302	0.24838590286630752	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	291	0.23933873421885923	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCG	276	0.22700168606324794	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	228	0.18752313196529177	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGC	225	0.1850557223341695	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	224	0.18423325245712877	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	198	0.16284903565406916	No Hit
ACTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTGC	194	0.15955915614590616	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTG	142	0.11679072253978698	No Hit
GCCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGTCTTCTG	130	0.10692108401529794	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCGTGATCAGTCGTATGCCGT	124	0.10198626475305342	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGGGAG	75	0.0	45.000004	5
CTCGTCC	20	7.0083904E-4	45.0	37
CTCGTAC	20	7.0083904E-4	45.0	29
TTTACGG	20	7.0083904E-4	45.0	2
AGATAGG	25	3.870184E-5	45.0	2
TTAGCAA	20	7.0083904E-4	45.0	11
TATGGGT	20	7.0083904E-4	45.0	4
ATTACTT	20	7.0083904E-4	45.0	23
TAGAAGG	20	7.0083904E-4	45.0	2
TCCTCGT	20	7.0083904E-4	45.0	35
GTTAGAG	20	7.0083904E-4	45.0	1
AGGGTCC	25	3.870184E-5	45.0	6
AGGGTAC	20	7.0083904E-4	45.0	6
TTTCCGC	20	7.0083904E-4	45.0	33
CACGAAC	20	7.0083904E-4	45.0	18
CCTCGTC	20	7.0083904E-4	45.0	36
CCAGATT	20	7.0083904E-4	45.0	19
GACTTTA	35	1.1999873E-7	45.0	9
CCCAAGC	20	7.0083904E-4	45.0	39
CAGATTA	20	7.0083904E-4	45.0	20

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content