SRR2934800.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934800.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	276935
Sequences flagged as poor quality	0
Sequence length	51
%GC	36

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12513	4.518388791593695	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCC	1468	0.5300882878653836	No Hit
CGTTATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	862	0.3112643761171394	No Hit
CCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	598	0.21593514723671617	No Hit
GCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	594	0.21449076498095218	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	542	0.19571379565602037	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCG	535	0.19318612670843338	No Hit
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAA	511	0.18451983317384946	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	481	0.17368696625561955	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	469	0.1693538194883276	No Hit
CTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGCT	377	0.13613302760575585	No Hit
GTGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG	370	0.1336053586581689	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGC	343	0.12385577843176197	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGT	337	0.12168920504811598	No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	304	0.10977305143806308	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	282	0.10182894903136115	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGCGG	30	2.1595133E-6	45.000004	2
GGCCGAT	35	1.2074634E-7	45.000004	8
CTATTGG	35	1.2074634E-7	45.000004	2
ACAACGG	20	7.0240034E-4	45.0	2
GGTGTAC	20	7.0240034E-4	45.0	9
GTTAGCG	20	7.0240034E-4	45.0	1
CGCGAGG	20	7.0240034E-4	45.0	2
CGTTATT	390	0.0	45.0	1
ACGATAG	20	7.0240034E-4	45.0	1
GTGTCTT	25	3.8831124E-5	45.0	7
AGACACG	20	7.0240034E-4	45.0	1
CGTAAGG	20	7.0240034E-4	45.0	2
GTAAGCG	25	3.8831124E-5	45.0	1
AGTACGG	20	7.0240034E-4	45.0	2
GTAGTAG	20	7.0240034E-4	45.0	1
CGTTTTT	6300	0.0	43.607143	1
TAGGGTA	75	0.0	42.000004	5
TAGTAGG	60	3.6379788E-12	41.250004	2
AGGGTAC	50	1.0750227E-9	40.5	6
TAAGGGA	140	0.0	40.178574	4