SRR2934797.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934797.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	637033
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGC	4567	0.7169173339528722	No Hit
CCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGC	4517	0.7090684470035304	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3408	0.5349801344671312	No Hit
CTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGCT	2872	0.4508400663701881	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGC	1686	0.2646644679318026	No Hit
CGCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTG	1392	0.2185130126696733	No Hit
ACTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTGC	1280	0.20093150590314787	No Hit
GCCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTG	742	0.11647748232823103	No Hit
ACCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTG	726	0.1139658385044417	No Hit
TGAGATGGGGGGAGGAAAGCAAGCCAGGTAAATCTGTCACTTTGGTCTGAA	681	0.10690184025003413	No Hit
AGCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTCTG	658	0.10329135225333695	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAAGGACGATCGTATGCCGTCTTC	639	0.1003087752125871	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	35	1.2107921E-7	45.000004	25
CTCACGA	35	1.2107921E-7	45.000004	24
ACACGCG	30	2.1639717E-6	45.000004	1
CGCTGTT	30	2.1639717E-6	45.000004	29
TAACGGA	30	2.1639717E-6	45.000004	29
ACGGGAA	125	0.0	45.000004	5
ATCGTGT	30	2.1639717E-6	45.000004	40
CGTTATC	30	2.1639717E-6	45.000004	42
CGCCTAG	35	1.2107921E-7	45.000004	11
GCCGATT	35	1.2107921E-7	45.000004	9
TTGACGG	30	2.1639717E-6	45.000004	2
CGCACGT	35	1.2107921E-7	45.000004	15
CGTCCGC	30	2.1639717E-6	45.000004	29
TCGACCG	35	1.2107921E-7	45.000004	1
ATACCGG	35	1.2107921E-7	45.000004	2
AATCGTG	30	2.1639717E-6	45.000004	39
TCTGCGC	20	7.030917E-4	45.0	12
CTTCGTT	20	7.030917E-4	45.0	25
TATCAGC	20	7.030917E-4	45.0	19
TGATATC	20	7.030917E-4	45.0	45