##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934796.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 565438 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.99006787658417 33.0 31.0 34.0 30.0 34.0 2 32.17912662396231 33.0 31.0 34.0 30.0 34.0 3 32.17707157990797 34.0 31.0 34.0 30.0 34.0 4 35.78467842628193 37.0 35.0 37.0 35.0 37.0 5 35.665830736526374 37.0 35.0 37.0 33.0 37.0 6 35.61348016935544 37.0 35.0 37.0 33.0 37.0 7 35.973206611511785 37.0 35.0 37.0 35.0 37.0 8 35.79924589433324 37.0 35.0 37.0 35.0 37.0 9 37.46780725738277 39.0 37.0 39.0 35.0 39.0 10 37.25873040014997 39.0 37.0 39.0 34.0 39.0 11 37.10921444968326 39.0 37.0 39.0 34.0 39.0 12 36.855117625628274 39.0 35.0 39.0 33.0 39.0 13 36.56019934988451 39.0 35.0 39.0 33.0 39.0 14 37.53230416066837 39.0 36.0 41.0 33.0 41.0 15 37.69400535514062 39.0 36.0 41.0 33.0 41.0 16 37.85476568606991 39.0 36.0 41.0 33.0 41.0 17 37.9021908679643 39.0 36.0 41.0 34.0 41.0 18 37.88788868098713 39.0 36.0 41.0 34.0 41.0 19 37.84984030079337 39.0 36.0 41.0 34.0 41.0 20 37.76311814911626 39.0 35.0 41.0 34.0 41.0 21 37.66848708434877 39.0 35.0 41.0 33.0 41.0 22 37.584074646557184 39.0 35.0 41.0 33.0 41.0 23 37.42105412087621 39.0 35.0 41.0 33.0 41.0 24 37.136018449414436 39.0 35.0 41.0 32.0 41.0 25 37.042183227869366 39.0 35.0 40.0 32.0 41.0 26 37.1865385771738 39.0 35.0 40.0 33.0 41.0 27 37.30856256565706 39.0 35.0 40.0 33.0 41.0 28 37.32269850982778 39.0 35.0 41.0 33.0 41.0 29 37.30951934606447 39.0 35.0 41.0 33.0 41.0 30 37.15185572954064 39.0 35.0 41.0 33.0 41.0 31 36.88245749312922 39.0 35.0 40.0 32.0 41.0 32 36.760005517846345 39.0 35.0 40.0 31.0 41.0 33 36.64076698064156 39.0 35.0 40.0 31.0 41.0 34 36.507834634389624 39.0 35.0 40.0 31.0 41.0 35 36.433465738065 39.0 35.0 40.0 31.0 41.0 36 36.401271226907284 39.0 35.0 40.0 31.0 41.0 37 36.284395459802845 38.0 35.0 40.0 30.0 41.0 38 36.263972354174996 38.0 35.0 40.0 30.0 41.0 39 36.309430919039755 39.0 35.0 40.0 30.0 41.0 40 36.08714483285524 38.0 35.0 40.0 30.0 41.0 41 36.05090213250613 38.0 35.0 40.0 30.0 41.0 42 36.0518376904276 38.0 35.0 40.0 30.0 41.0 43 36.04155185891291 38.0 35.0 40.0 30.0 41.0 44 35.96532776360981 38.0 35.0 40.0 30.0 41.0 45 35.89820104060923 38.0 35.0 40.0 30.0 41.0 46 35.78424690240132 38.0 35.0 40.0 29.0 41.0 47 35.58940325906642 38.0 35.0 40.0 28.0 41.0 48 35.63567181547756 38.0 35.0 40.0 28.0 41.0 49 35.682120763019114 38.0 35.0 40.0 29.0 41.0 50 35.54067112574677 38.0 35.0 40.0 28.0 41.0 51 34.60139926923907 37.0 34.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 5.0 10 9.0 11 15.0 12 4.0 13 15.0 14 14.0 15 21.0 16 31.0 17 83.0 18 154.0 19 307.0 20 469.0 21 830.0 22 1281.0 23 1869.0 24 2667.0 25 4016.0 26 5231.0 27 6047.0 28 6705.0 29 7725.0 30 9161.0 31 11708.0 32 15877.0 33 22954.0 34 43259.0 35 60097.0 36 45433.0 37 69471.0 38 122004.0 39 127915.0 40 57.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.869050187642145 23.204842971289512 23.930121427990336 14.995985413078003 2 31.7175357864169 24.358285081653513 25.214966097078722 18.70921303485086 3 30.119659449842423 24.441229630834858 28.80757925714225 16.631531662180468 4 28.341038274753377 25.77612399591113 27.806231629285616 18.076606100049872 5 23.275761445109808 28.272595757625062 28.12775229114421 20.323890506120918 6 23.470831461627977 30.83468037167647 27.954435322705585 17.74005284398997 7 73.45120066214156 5.842196668777125 13.591410552527423 7.115192116553892 8 71.32258532323614 4.962524626926382 14.33578924656638 9.379100803271093 9 65.95400379882498 6.765197952737524 17.415171955192257 9.865626293245237 10 38.525709273165226 23.61302211736742 23.23455445159328 14.626714157874074 11 29.917692125396595 23.982293372571352 27.058139000208687 19.041875501823366 12 29.069500104343888 20.7403817925219 32.089813560461096 18.10030454267311 13 21.57902369490554 28.696161206003133 32.72684184649776 16.997973252593564 14 15.80279358656475 32.42159175718646 30.389538729268285 21.3860759269805 15 13.111782370480936 26.6129973578005 41.54902924812269 18.726191023595867 16 14.876962637813518 26.18872449322472 36.93384597427127 22.000466894690486 17 14.563400408179147 25.695655403421775 29.949525854293483 29.791418334105597 18 17.53012708731992 26.022304832713754 34.49520548672003 21.952362593246296 19 19.598788903469522 26.71628012266597 30.99084249732066 22.694088476543847 20 22.494950816888853 27.545902468528823 30.20207343687548 19.75707327770684 21 19.160367714939568 27.783771165008364 32.26932042062967 20.786540699422396 22 16.26296782317425 26.61052140110852 28.852323331647323 28.27418744406991 23 17.196757204149705 26.47487434519788 30.16104329740838 26.167325153244036 24 21.661260827889176 23.40062040400539 31.40273557843654 23.53538318966889 25 16.093187935724167 27.39009405098349 29.781337653288247 26.7353803600041 26 15.861332276925143 31.989183606337036 29.298879806450927 22.850604310286894 27 18.61777949129701 29.4028699875141 31.26761908467418 20.711731436514704 28 14.393620520729064 26.622193768370717 32.71499262518614 26.269193085714083 29 18.386277540596847 25.973493115071854 31.536614093852904 24.10361525047839 30 22.45268269907576 26.121519954442395 29.66991960214913 21.75587774433271 31 20.49313983142272 31.405388389177947 24.132796168633874 23.968675610765462 32 23.441827397521923 31.82400192417206 23.00800441427707 21.726166264028947 33 23.65670506757593 27.151517938306235 24.84410315542995 24.347673838687882 34 18.596910713464606 27.82285590993177 26.843968746352388 26.736264630251238 35 19.030910550758882 28.748686858683005 25.799291876386093 26.421110714172023 36 21.75039526880047 26.730959008768423 27.072641032261718 24.44600469016939 37 18.961937471482283 27.656082541321947 30.576827167611658 22.80515281958411 38 20.50251309604236 28.64275128307613 24.623743009843697 26.230992611037813 39 24.600221421269882 23.76883053491276 27.881394600292165 23.749553443525194 40 23.92817603344664 25.921851732639123 28.664327477106244 21.485644756807996 41 16.585549609329405 28.40665112709086 26.37194528843127 28.635853975148468 42 19.683855701243992 24.4935784294653 27.511062220791672 28.31150364849904 43 23.387179496248926 21.915223242866592 29.109822827613286 25.5877744332712 44 20.46183666467411 24.27604794866988 26.889420237055166 28.37269514960084 45 22.242403234306856 24.093711423710467 25.6040450058185 28.05984033616418 46 24.195756210229945 24.43857682009345 28.17567973853897 23.189987231137632 47 17.126546146527115 25.977030196060397 31.932236602421487 24.964187054991 48 19.00721210813564 22.250892228679362 30.285902256303963 28.455993406881035 49 21.807872834864302 18.83088862085675 33.55328081947092 25.807957724808023 50 20.401706287868873 20.98426352668197 31.991482708979586 26.62254747646957 51 18.492389970253146 21.743674814922237 26.1970366335478 33.56689858127682 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1055.0 1 1133.0 2 1211.0 3 3316.0 4 5421.0 5 3572.0 6 1723.0 7 1768.5 8 1814.0 9 1870.5 10 1927.0 11 1977.0 12 2027.0 13 2004.0 14 1981.0 15 1870.5 16 1760.0 17 1774.5 18 1789.0 19 1896.5 20 2004.0 21 1921.5 22 1839.0 23 2034.0 24 2229.0 25 2425.0 26 2876.5 27 3132.0 28 3631.0 29 4130.0 30 4926.0 31 5722.0 32 6968.5 33 8215.0 34 8965.5 35 9716.0 36 10714.5 37 11713.0 38 13297.0 39 14881.0 40 18401.5 41 21922.0 42 27715.5 43 33509.0 44 40990.5 45 48472.0 46 58090.0 47 67708.0 48 78393.0 49 89078.0 50 85246.5 51 81415.0 52 63150.5 53 44886.0 54 36052.5 55 27219.0 56 22251.0 57 17283.0 58 15187.0 59 13091.0 60 12671.5 61 12252.0 62 10579.0 63 8906.0 64 7074.5 65 5243.0 66 3900.0 67 2557.0 68 2318.5 69 2080.0 70 1707.5 71 1335.0 72 1056.0 73 777.0 74 647.0 75 297.0 76 77.0 77 99.5 78 122.0 79 77.0 80 32.0 81 19.5 82 7.0 83 7.0 84 7.0 85 4.5 86 2.0 87 1.5 88 1.0 89 14.0 90 27.0 91 14.0 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 565438.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.31331689630751 #Duplication Level Percentage of deduplicated Percentage of total 1 65.19473349679366 16.502949489746523 2 12.628081007941194 6.393172326925156 3 6.189326568895062 4.700171544395291 4 3.641475786072195 3.6871132217230387 5 2.297125632849457 2.9073934547474622 6 1.602672495724107 2.4341374059156218 7 1.1510819422644023 2.0396391384709176 8 0.8682945698882101 1.7583532485538633 9 0.6443855836655579 1.468038283446451 >10 4.453608387953213 23.525586933004966 >50 1.0980467839611752 19.498212273695938 >100 0.21707214984598325 8.753527521626864 >500 0.007752576780213688 1.3858354418130168 >1k 0.004933457951045074 2.7736333179540384 >5k 0.0014095594145843069 2.172236397980856 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCTGC 6949 1.2289587894694025 RNA PCR Primer, Index 30 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCTGC 5227 0.9244161163558162 Illumina Single End Adapter 2 (95% over 22bp) CTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCTGCT 4156 0.7350054294193175 RNA PCR Primer, Index 30 (96% over 25bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3481 0.6156289460559778 No Hit TCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCTGC 2132 0.37705283337872586 Illumina Single End Adapter 2 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCTG 1904 0.3367301101093312 RNA PCR Primer, Index 30 (95% over 23bp) ACTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCTGC 1690 0.29888334353191687 Illumina Single End Adapter 2 (95% over 22bp) ACCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCTG 1178 0.20833407022520595 Illumina Single End Adapter 2 (95% over 21bp) AAAACTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTC 1006 0.17791517372373275 RNA PCR Primer, Index 30 (95% over 21bp) GCCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCTG 966 0.17084101174664595 Illumina Single End Adapter 2 (95% over 21bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 895 0.1582843742373169 No Hit CGTTCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTC 823 0.1455508826785607 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCC 794 0.14042211524517276 No Hit AGCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCTG 784 0.13865357475090107 RNA PCR Primer, Index 30 (95% over 23bp) GGCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCTG 726 0.12839603988412523 RNA PCR Primer, Index 30 (95% over 23bp) ATAAGCGGGGAAGGAATGTTTTTTGTTTGTTTGTTTTGTCTCTTGATGTTT 650 0.11495513212766034 No Hit AGCCTGTCTCTTATACACATCTGACGCATCGGAACTCGTATGCCGTCTTCT 594 0.1050513053597388 RNA PCR Primer, Index 30 (95% over 22bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.7850551254072065 0.0 2 0.0 0.0 0.0 3.825353089109681 0.0 3 0.0 0.0 0.0 5.282984164488414 0.0 4 0.0 0.0 0.0 6.768204471577786 0.0 5 0.0 0.0 0.0 10.573042490953915 0.0 6 0.0 0.0 0.0 12.470155879159165 0.0 7 0.0 0.0 0.0 14.479748442800094 0.0 8 0.0 0.0 0.0 17.293673223235793 0.0 9 0.0 0.0 0.0 18.26672420318408 0.0 10 0.0 0.0 0.0 20.3100958902656 0.0 11 0.0 0.0 0.0 23.687123964077404 0.0 12 0.0 0.0 0.0 26.074830485393623 0.0 13 0.0 0.0 0.0 27.132417700968098 0.0 14 0.0 0.0 0.0 27.49408423204666 0.0 15 0.0 0.0 0.0 28.291872849012623 0.0 16 0.0 0.0 0.0 29.789119231463044 0.0 17 0.0 0.0 0.0 31.653691474573694 0.0 18 0.0 0.0 0.0 33.84119921193835 0.0 19 0.0 0.0 0.0 34.89878642751283 0.0 20 1.7685404942716974E-4 0.0 0.0 35.938334530045736 0.0 21 1.7685404942716974E-4 0.0 0.0 37.328761066642144 0.0 22 3.537080988543395E-4 0.0 0.0 38.56249491544608 0.0 23 3.537080988543395E-4 0.0 0.0 39.863787011131194 0.0 24 3.537080988543395E-4 0.0 0.0 40.75672310668897 0.0 25 3.537080988543395E-4 0.0 0.0 41.57644162578391 0.0 26 3.537080988543395E-4 0.0 0.0 42.276783661515495 0.0 27 3.537080988543395E-4 0.0 0.0 42.96669130833089 0.0 28 3.537080988543395E-4 0.0 0.0 43.62582635054595 0.0 29 3.537080988543395E-4 0.0 0.0 44.32298501338785 0.0 30 3.537080988543395E-4 0.0 0.0 45.21804335753876 0.0 31 3.537080988543395E-4 0.0 0.0 45.9877121806458 0.0 32 3.537080988543395E-4 0.0 0.0 46.714051761643184 0.0 33 3.537080988543395E-4 0.0 0.0 47.36080702039835 0.0 34 3.537080988543395E-4 0.0 0.0 48.01622812757544 0.0 35 5.305621482815092E-4 0.0 0.0 48.76538188094893 0.0 36 5.305621482815092E-4 0.0 0.0 49.476512013695576 0.0 37 5.305621482815092E-4 0.0 0.0 50.11442456997938 0.0 38 5.305621482815092E-4 0.0 0.0 50.70670878151097 0.0 39 5.305621482815092E-4 0.0 0.0 51.34886583498103 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTCG 35 1.2104647E-7 45.000004 1 TCACATA 30 2.163537E-6 45.000004 32 GACCGAC 30 2.163537E-6 45.000004 9 TTCGTAG 35 1.2104647E-7 45.000004 1 AAGCGGT 30 2.163537E-6 45.000004 15 CGCGAGG 35 1.2104647E-7 45.000004 2 CCGTCCG 35 1.2104647E-7 45.000004 13 GTGGACG 30 2.163537E-6 45.000004 1 AAACGTA 30 2.163537E-6 45.000004 31 AAGTTCG 35 1.2104647E-7 45.000004 1 TGATTAG 35 1.2104647E-7 45.000004 1 TACGAAG 30 2.163537E-6 45.000004 1 ACATGCG 30 2.163537E-6 45.000004 1 ACGTAAA 30 2.163537E-6 45.000004 33 GCCAGCG 30 2.163537E-6 45.000004 1 GGCGAGT 30 2.163537E-6 45.000004 24 CATCCGC 30 2.163537E-6 45.000004 14 GCTCGGA 30 2.163537E-6 45.000004 13 CGATCTT 30 2.163537E-6 45.000004 10 AGGGCGC 30 2.163537E-6 45.000004 6 >>END_MODULE