SRR2934795.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934795.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1222061
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTCTGC	8336	0.6821263423020618	TruSeq Adapter, Index 16 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTCTGC	6101	0.4992385813801439	TruSeq Adapter, Index 16 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6071	0.4967837121060242	No Hit
CTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTCTGCT	4504	0.3685577070211716	TruSeq Adapter, Index 13 (95% over 22bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	3851	0.31512338582116606	No Hit
TCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTCTGC	3073	0.2514604426456617	TruSeq Adapter, Index 16 (95% over 21bp)
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	2279	0.18648823585729354	No Hit
ACTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTCTGC	2257	0.18468799838960576	TruSeq Adapter, Index 13 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTCTG	2078	0.17004061172069151	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGC	1620	0.13256294080246403	No Hit
GAATCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTC	1582	0.12945343972191242	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCG	1545	0.12642576761716479	No Hit
ACCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTCTG	1543	0.1262621096655568	No Hit
GCCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTCTG	1392	0.11390593431915429	No Hit
AGCTGTCTCTTATACACATCTGACGCCAAAGCTGTCGTATGCCGTCTTCTG	1281	0.10482291800491138	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGACG	35	1.2120108E-7	45.000004	1
TAGCGAT	35	1.2120108E-7	45.000004	12
TCCGTTG	35	1.2120108E-7	45.000004	16
GACGATT	35	1.2120108E-7	45.000004	18
ATGCACG	35	1.2120108E-7	45.000004	1
CTAGACG	25	3.8909515E-5	45.0	1
ACACGTA	25	3.8909515E-5	45.0	40
TCCGCGA	25	3.8909515E-5	45.0	45
CGAAATC	20	7.0334616E-4	45.0	34
ACCGACA	25	3.8909515E-5	45.0	12
ACCGAAC	25	3.8909515E-5	45.0	11
CGACATA	20	7.0334616E-4	45.0	33
ACCTCGT	25	3.8909515E-5	45.0	37
CTGCGAA	25	3.8909515E-5	45.0	35
CATACCG	20	7.0334616E-4	45.0	29
CGTAATT	25	3.8909515E-5	45.0	36
CGGTCTA	80	0.0	45.0	31
ACCCGTG	20	7.0334616E-4	45.0	20
CGGTATC	20	7.0334616E-4	45.0	45
CGCAATA	25	3.8909515E-5	45.0	9