SRR2934793.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934793.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	859394
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	8458	0.9841818769970468	No Hit
GCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	7345	0.8546720130696748	No Hit
CTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGCT	4995	0.5812235133128693	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4536	0.5278137850624975	No Hit
TCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	2809	0.3268582280071772	No Hit
ACTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTGC	2207	0.25680886764394445	No Hit
CGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTG	2125	0.2472672604183878	No Hit
GCCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTG	1467	0.17070168048648235	No Hit
ACCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTG	1212	0.1410296092362758	No Hit
GGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTG	1161	0.13509519498623448	No Hit
AGCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCCGTCTTCTG	1028	0.11961917351063656	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTAGGGTTCGTATGCC	977	0.11368475926059526	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	95	0.0	45.000004	1
CAACCGG	50	2.1827873E-11	45.000004	2
CCTCCGT	25	3.8899805E-5	45.000004	30
CTCATAG	25	3.8899805E-5	45.000004	1
TTCGAAT	25	3.8899805E-5	45.000004	21
CGGAGGT	25	3.8899805E-5	45.000004	11
CGCCCGT	25	3.8899805E-5	45.000004	39
ACGGTTC	25	3.8899805E-5	45.000004	5
CGAACAT	20	7.032291E-4	45.0	40
GCGACAA	35	1.211447E-7	45.0	39
TCCGAAC	20	7.032291E-4	45.0	17
GACGTAT	20	7.032291E-4	45.0	11
GTTAGCG	20	7.032291E-4	45.0	1
TAACGCC	20	7.032291E-4	45.0	12
TCGATCT	20	7.032291E-4	45.0	35
ACGGGTC	70	0.0	45.0	5
TCCTACG	20	7.032291E-4	45.0	13
TGTTGCG	40	6.8121153E-9	45.0	1
ACGATTG	35	1.211447E-7	45.0	1
CCGTAGA	20	7.032291E-4	45.0	24