SRR2934791.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934791.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	495310
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	6275	1.2668833659728251	No Hit
GCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	6251	1.2620379156487858	No Hit
CTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGCT	3813	0.7698209202317741	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2952	0.5959903898568574	No Hit
TCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	2144	0.4328602289475278	No Hit
ACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTGC	1786	0.36058226161393875	No Hit
CGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTG	1687	0.34059477902727586	No Hit
GCCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTG	1112	0.22450586501382971	No Hit
ACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTG	993	0.20048050715713392	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	990	0.19987482586662897	No Hit
AGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTG	978	0.19745210070460922	No Hit
AAAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTC	944	0.1905877127455533	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCC	887	0.1790797682259595	No Hit
GGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTG	861	0.17383053037491672	No Hit
GACCAGAAAAATGGTCCTGCCAAGCGGCTACAGTGTTCTTCTTTCAGATAC	782	0.15788092305828672	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTC	714	0.14415214714017485	No Hit
GTATTAGGGAGATCTTCCTTGAAGTATTTTTTAAAAAATATATTTCCCTTT	549	0.11083967616240334	No Hit
CGTCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT	542	0.10942641981789183	No Hit
GAAACTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTC	540	0.10902263229088853	No Hit
GAATCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTC	531	0.10720558841937372	No Hit
GGCCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCT	531	0.10720558841937372	No Hit
TGCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTCTG	500	0.10094688175082273	No Hit
GGACCTGTCTCTTATACACATCTGACGCTCCGAGAATCGTATGCCGTCTTC	497	0.10034120046031779	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTGCG	25	3.887579E-5	45.000004	1
CGGGTAA	35	1.2100463E-7	45.000004	6
GGTACTA	50	2.1827873E-11	45.000004	8
CTCACGT	25	3.887579E-5	45.000004	45
CTCACGA	25	3.887579E-5	45.000004	24
GGTACGA	30	2.1629912E-6	45.000004	8
AGTCCCA	25	3.887579E-5	45.000004	38
AGTCATA	25	3.887579E-5	45.000004	37
GCGAAGT	35	1.2100463E-7	45.000004	27
GCGCGAC	25	3.887579E-5	45.000004	9
TAGGTGA	25	3.887579E-5	45.000004	36
CGTGAGA	30	2.1629912E-6	45.000004	2
GACCGTT	25	3.887579E-5	45.000004	20
CTATACG	25	3.887579E-5	45.000004	1
TAGAACG	25	3.887579E-5	45.000004	1
AGCCACG	25	3.887579E-5	45.000004	29
GATCCAA	30	2.1629912E-6	45.000004	29
GCGCCCC	30	2.1629912E-6	45.000004	10
ATTAACG	25	3.887579E-5	45.000004	1
GGTCATA	30	2.1629912E-6	45.000004	8

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content