SRR2934786.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934786.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	895213
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC	8523	0.9520639222173941	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC	8458	0.9448030803842214	TruSeq Adapter, Index 13 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGCT	5740	0.6411881864986322	TruSeq Adapter, Index 16 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4839	0.5405417481649619	No Hit
TCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC	4014	0.448384909513155	TruSeq Adapter, Index 13 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTGC	2992	0.3342221348438863	TruSeq Adapter, Index 16 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTG	2928	0.32707299826968556	No Hit
ACCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTG	1718	0.1919096349137021	No Hit
GGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTG	1562	0.1744836145140877	No Hit
GCCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTG	1503	0.16789300423474637	No Hit
AGCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCTG	1479	0.1652120780194211	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCC	1334	0.14901481546849743	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTC	1097	0.12254066909216019	No Hit
AGCCTGTCTCTTATACACATCTGACGCGGTAGCTATCGTATGCCGTCTTCT	962	0.10746045913095544	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATCG	20	7.032449E-4	45.000004	1
AGCCGGT	35	1.2115197E-7	45.000004	13
GTCGAAG	45	3.8380676E-10	45.000004	1
GGCACGC	20	7.032449E-4	45.000004	8
ACACCGA	20	7.032449E-4	45.000004	26
CTATACG	20	7.032449E-4	45.000004	29
CGGTTCA	20	7.032449E-4	45.000004	13
CGCATCG	20	7.032449E-4	45.000004	21
GCAAACG	20	7.032449E-4	45.000004	1
CGCGCCA	20	7.032449E-4	45.000004	11
ATTAACG	20	7.032449E-4	45.000004	1
CCAGCCG	45	3.8380676E-10	45.000004	18
TAAGTCA	20	7.032449E-4	45.000004	1
TAACGTG	20	7.032449E-4	45.000004	1
ATCACGC	20	7.032449E-4	45.000004	13
CCCACCG	20	7.032449E-4	45.000004	33
GTTACGA	20	7.032449E-4	45.000004	13
TCGTGAT	20	7.032449E-4	45.000004	43
TAATTCG	20	7.032449E-4	45.000004	23
GGACGTA	20	7.032449E-4	45.000004	8