##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934783.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2161005 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.03675188164766 33.0 31.0 34.0 30.0 34.0 2 32.21623411329451 34.0 31.0 34.0 30.0 34.0 3 32.21235536243553 34.0 31.0 34.0 30.0 34.0 4 35.81783984766347 37.0 35.0 37.0 35.0 37.0 5 35.697314906721644 37.0 35.0 37.0 33.0 37.0 6 35.62239143361538 37.0 35.0 37.0 33.0 37.0 7 36.01212769058841 37.0 35.0 37.0 35.0 37.0 8 35.878125224143396 37.0 35.0 37.0 35.0 37.0 9 37.613835229441854 39.0 38.0 39.0 35.0 39.0 10 37.13371602564548 39.0 37.0 39.0 34.0 39.0 11 37.0742446222938 39.0 37.0 39.0 33.0 39.0 12 37.08033067947552 39.0 37.0 39.0 33.0 39.0 13 37.06213682985463 39.0 37.0 39.0 33.0 39.0 14 38.17117406021735 40.0 37.0 41.0 33.0 41.0 15 38.20886300586995 40.0 37.0 41.0 33.0 41.0 16 38.29498682326047 40.0 37.0 41.0 34.0 41.0 17 38.30742825676016 40.0 37.0 41.0 34.0 41.0 18 38.28076473677756 40.0 37.0 41.0 34.0 41.0 19 38.24157510047409 40.0 37.0 41.0 34.0 41.0 20 38.19584267505165 40.0 37.0 41.0 34.0 41.0 21 38.16010513626762 40.0 37.0 41.0 34.0 41.0 22 38.11454346473053 40.0 37.0 41.0 34.0 41.0 23 37.919025638533924 40.0 37.0 41.0 33.0 41.0 24 37.650560271725425 39.0 36.0 41.0 33.0 41.0 25 37.606469674989185 39.0 36.0 41.0 33.0 41.0 26 37.81714618892599 39.0 37.0 41.0 33.0 41.0 27 37.93891684655982 40.0 37.0 41.0 34.0 41.0 28 37.92254252072531 40.0 37.0 41.0 34.0 41.0 29 37.90211545091289 40.0 37.0 41.0 34.0 41.0 30 37.7910444445987 40.0 37.0 41.0 33.0 41.0 31 37.719162611840325 40.0 37.0 41.0 33.0 41.0 32 37.60222812996731 40.0 36.0 41.0 33.0 41.0 33 37.52450966101421 40.0 36.0 41.0 33.0 41.0 34 37.50564297630038 40.0 37.0 41.0 33.0 41.0 35 37.427824091105755 40.0 36.0 41.0 33.0 41.0 36 37.41122579540538 40.0 36.0 41.0 33.0 41.0 37 37.32074196959285 40.0 36.0 41.0 32.0 41.0 38 37.20315779000974 40.0 36.0 41.0 32.0 41.0 39 37.24896286681428 40.0 36.0 41.0 32.0 41.0 40 37.230036024905075 40.0 36.0 41.0 32.0 41.0 41 37.19668024831039 40.0 36.0 41.0 32.0 41.0 42 37.116121434240085 39.0 36.0 41.0 32.0 41.0 43 37.05051445970741 39.0 36.0 41.0 31.0 41.0 44 36.990547453615335 39.0 36.0 41.0 31.0 41.0 45 36.93299321380562 39.0 35.0 41.0 31.0 41.0 46 36.89034268777721 39.0 35.0 41.0 31.0 41.0 47 36.765885779995884 39.0 35.0 41.0 31.0 41.0 48 36.73603577964882 39.0 35.0 41.0 31.0 41.0 49 36.74117829435841 39.0 35.0 41.0 31.0 41.0 50 36.6427703776715 39.0 35.0 41.0 31.0 41.0 51 35.598464140527206 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 4.0 9 16.0 10 30.0 11 19.0 12 29.0 13 19.0 14 27.0 15 43.0 16 65.0 17 151.0 18 349.0 19 590.0 20 1114.0 21 1818.0 22 2937.0 23 4546.0 24 6992.0 25 11007.0 26 15243.0 27 17586.0 28 19437.0 29 22974.0 30 28626.0 31 37858.0 32 50420.0 33 70277.0 34 115959.0 35 152845.0 36 167954.0 37 268669.0 38 509184.0 39 653886.0 40 330.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 40.772649762494765 22.591618251693077 26.255422824102677 10.380309161709482 2 33.531157956598896 24.190041207678835 24.787263333495297 17.491537502226972 3 30.54935088072448 24.320536046885593 28.05713082570378 17.07298224668615 4 27.791050923065892 26.384483145573473 27.634873588908864 18.18959234245178 5 24.519471264527386 29.40742848813399 27.245332611446987 18.827767635891636 6 24.2337708612428 33.331713716534665 27.264120166311507 15.170395255911023 7 78.92341757654424 5.370325381014852 10.308583274911442 5.39767376752946 8 79.17121894674007 3.850569526678559 10.09701504624006 6.881196480341323 9 74.37303476854518 5.591379936649846 12.667022982362372 7.368562312442591 10 35.9284684672178 21.712860451502888 24.65265004014336 17.70602104113595 11 25.762827943479998 27.235707460186347 25.509843799528458 21.49162079680519 12 22.336042720863674 22.908554121809065 33.04203368340193 21.713369473925326 13 22.70101179775151 25.092630512192244 34.07895863267322 18.127399057383023 14 20.576676129856246 27.585498413932406 30.959391579380892 20.878433876830456 15 18.8693686502345 26.858799493754066 34.957022311378275 19.314809544633167 16 20.059277974831154 26.644593603439144 31.369293453740273 21.926834967989432 17 20.64696749891833 26.749822420586717 28.6427842601012 23.960425820393752 18 20.766032471003072 26.217477516248227 32.75637955488303 20.260110457865668 19 20.179916288948892 28.706921085328354 29.932045506604567 21.181117119118188 20 20.084543996890336 29.130612839859232 30.54028102665195 20.244562136598482 21 20.016751465174767 28.23755613707511 31.91422509434268 19.831467303407443 22 18.87677261274268 26.03557141237526 29.06189481283014 26.025761162051914 23 17.723003880139103 27.639084592585395 30.046668101184405 24.5912434260911 24 20.452613483078473 25.939042251174797 30.30113303763758 23.307211228109143 25 17.975479001668205 28.07425248900396 29.137415230413627 24.81285327891421 26 17.476081730491135 27.759537807640427 31.99400279036837 22.770377671500068 27 20.3384536361554 26.4855472338102 29.76749243986016 23.408506690174246 28 18.149657219673255 25.975784415121666 31.067628256297418 24.80693010890766 29 18.793061561634516 25.22516144108875 31.56489688825338 24.41688010902335 30 20.110365316137628 25.916737814118896 30.07276706902575 23.90012980071772 31 20.159324018223003 27.73353138933043 28.71816585338766 23.38897873905891 32 20.068347828903683 28.27800028227607 28.40488568976009 23.24876619906016 33 19.55261556544293 25.231963831643146 29.197387326729924 26.018033276184 34 18.685009983780695 23.98485889667076 32.89691601824151 24.43321510130703 35 18.950118116339386 24.17949056110467 31.239492736018658 25.63089858653728 36 20.360341600320222 23.840481627761157 30.4883607395633 25.310816032355316 37 20.179638640354835 25.37125087632838 31.417974507231587 23.031135976085203 38 20.560202313275536 27.36569327697067 28.078509767446164 23.99559464230763 39 19.72508161711796 24.232984190226308 32.63185416044849 23.410080032207237 40 20.78102549508215 22.14636245635711 34.76692557398062 22.305686474580114 41 20.289680033132733 22.947702573571092 29.62339281954461 27.139224573751562 42 21.563207859306203 22.29707936816435 29.593962068574577 26.545750703954873 43 21.648260878618974 23.195503943766905 29.76337398571498 25.39286119189914 44 20.264645384901932 23.895224675556047 28.879202037940683 26.960927901601337 45 20.469087299659186 22.721141320820635 30.235978167565552 26.573793211954623 46 22.38879595373449 22.268712936804867 31.75753873776322 23.58495237169743 47 19.1037966131499 22.559873762439235 33.72199509024736 24.614334534163504 48 19.57913100617537 21.472185395221207 31.5376873260358 27.410996272567623 49 21.27940472141434 20.1882457467706 33.154759012589054 25.377590519226008 50 20.14974514172804 19.35136660951733 32.988354955217595 27.510533293537037 51 19.53156054706028 19.486026177634944 29.471611588126823 31.51080168717796 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 699.0 1 966.0 2 1233.0 3 5469.5 4 9706.0 5 6946.0 6 4186.0 7 4127.5 8 4069.0 9 4185.0 10 4301.0 11 4387.0 12 4473.0 13 4411.5 14 4350.0 15 4287.5 16 4225.0 17 4477.5 18 4730.0 19 4720.5 20 4711.0 21 4774.0 22 4837.0 23 5586.0 24 6335.0 25 7622.0 26 10586.5 27 12264.0 28 14263.5 29 16263.0 30 20302.0 31 24341.0 32 30424.0 33 36507.0 34 42026.0 35 47545.0 36 54321.0 37 61097.0 38 69977.0 39 78857.0 40 91279.5 41 103702.0 42 118179.0 43 132656.0 44 154579.0 45 176502.0 46 214640.0 47 252778.0 48 291601.0 49 330424.0 50 319908.5 51 309393.0 52 250955.5 53 192518.0 54 156166.0 55 119814.0 56 96578.5 57 73343.0 58 60463.5 59 47584.0 60 39857.5 61 32131.0 62 26745.5 63 21360.0 64 16775.0 65 12190.0 66 9411.5 67 6633.0 68 4661.5 69 2690.0 70 2241.5 71 1793.0 72 1291.5 73 790.0 74 700.0 75 395.5 76 181.0 77 164.5 78 148.0 79 112.5 80 77.0 81 52.0 82 27.0 83 17.5 84 8.0 85 6.0 86 4.0 87 4.0 88 4.0 89 5.0 90 6.0 91 3.0 92 0.0 93 0.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2161005.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 26.049738115725308 #Duplication Level Percentage of deduplicated Percentage of total 1 63.30879540135885 16.491775406274325 2 13.70048720081497 7.137882072781529 3 6.6190223909919395 5.17271399602386 4 3.768311282867444 3.9265408822891916 5 2.402684976570035 3.12946572071185 6 1.637559860169397 2.559480330374193 7 1.1445225324113646 2.0870158565803947 8 0.8878213524584965 1.8502010980074308 9 0.6820376258153493 1.599021138380481 >10 4.728419234332402 26.219094448828674 >50 0.9244110516301757 16.486326553893548 >100 0.17985611985721167 7.357063654851194 >500 0.011195507694232368 1.964148654305246 >1k 0.003972599504405034 1.8758099443525382 >5k 5.417181142370501E-4 0.956767497570857 >10k+ 3.611454094913667E-4 1.1866927447747089 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTGC 13532 0.6261901291297336 TruSeq Adapter, Index 27 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTGC 11696 0.5412296593483125 TruSeq Adapter, Index 27 (95% over 22bp) CTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTGCT 8953 0.41429797709861843 Illumina Single End Adapter 2 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTGC 6074 0.2810729267169673 TruSeq Adapter, Index 27 (95% over 22bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5313 0.24585783003741313 No Hit ACTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTGC 4172 0.19305832240091994 Illumina Single End Adapter 2 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTG 3600 0.1665891564341591 No Hit AGCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTG 2855 0.1321144560054234 No Hit ACCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTG 2823 0.1306336635037864 No Hit GCCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTG 2594 0.12003674216394687 TruSeq Adapter, Index 27 (95% over 21bp) GGCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTTCTG 2298 0.1063394115238049 TruSeq Adapter, Index 27 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.8509906270462124E-4 0.0 0.0 0.4349365225901837 0.0 2 1.8509906270462124E-4 0.0 0.0 2.1659829570038016 0.0 3 1.8509906270462124E-4 0.0 0.0 3.160427671384379 0.0 4 1.8509906270462124E-4 0.0 0.0 4.257833739394402 0.0 5 1.8509906270462124E-4 0.0 0.0 7.012015242907814 0.0 6 1.8509906270462124E-4 0.0 0.0 8.519184360980192 0.0 7 1.8509906270462124E-4 0.0 0.0 10.024965236082286 0.0 8 1.8509906270462124E-4 0.0 0.0 12.354575764516973 0.0 9 1.8509906270462124E-4 0.0 0.0 13.074611118437948 0.0 10 1.8509906270462124E-4 0.0 0.0 15.06558291165453 0.0 11 1.8509906270462124E-4 0.0 0.0 18.06872265450566 0.0 12 1.8509906270462124E-4 0.0 0.0 20.149051020242897 0.0 13 1.8509906270462124E-4 0.0 0.0 20.99282509758191 0.0 14 1.8509906270462124E-4 0.0 0.0 21.283708274622224 0.0 15 1.8509906270462124E-4 0.0 0.0 21.90397523374541 0.0 16 1.8509906270462124E-4 0.0 0.0 23.382315172801544 0.0 17 1.8509906270462124E-4 0.0 0.0 25.234277569926956 0.0 18 1.8509906270462124E-4 0.0 0.0 27.2117371315661 0.0 19 1.8509906270462124E-4 0.0 0.0 28.346995957899217 0.0 20 1.8509906270462124E-4 0.0 0.0 29.411870865638903 0.0 21 1.8509906270462124E-4 0.0 0.0 30.80339934428657 0.0 22 2.3137382838077654E-4 0.0 0.0 32.29839819898612 0.0 23 2.3137382838077654E-4 0.0 0.0 33.84975971827922 0.0 24 2.3137382838077654E-4 0.0 0.0 34.97270945694249 0.0 25 2.3137382838077654E-4 0.0 0.0 36.01620542293979 0.0 26 2.7764859405693187E-4 0.0 0.0 36.9459580149051 0.0 27 2.7764859405693187E-4 0.0 0.0 37.883068294612926 0.0 28 2.7764859405693187E-4 0.0 0.0 38.83109941902032 0.0 29 2.7764859405693187E-4 0.0 0.0 39.76659008192947 0.0 30 2.7764859405693187E-4 0.0 0.0 40.790419272514406 0.0 31 3.701981254092425E-4 0.0 0.0 41.780838082281164 0.0 32 3.701981254092425E-4 0.0 0.0 42.69333018664927 0.0 33 3.701981254092425E-4 0.0 0.0 43.59411477530131 0.0 34 3.701981254092425E-4 0.0 0.0 44.4189161987131 0.0 35 3.701981254092425E-4 0.0 0.0 45.254869840652844 0.0 36 3.701981254092425E-4 0.0 0.0 46.07504378749702 0.0 37 4.164728910853978E-4 0.0 0.0 46.88790632136436 0.0 38 4.627476567615531E-4 0.0 0.0 47.711689699931284 0.0 39 4.627476567615531E-4 0.0 0.0 48.50692154807601 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCGCGT 25 3.891949E-5 45.000004 29 CGACGGT 30 2.1663927E-6 45.000004 28 CGCGCCA 30 2.1663927E-6 45.000004 39 GTATCCG 25 3.891949E-5 45.000004 1 CGACTCG 25 3.891949E-5 45.000004 2 GCGTAAC 25 3.891949E-5 45.000004 32 ACGCGCC 30 2.1663927E-6 45.000004 38 TATTTCG 20 7.0346677E-4 45.0 12 CGGCGGT 20 7.0346677E-4 45.0 30 ACCGGTA 20 7.0346677E-4 45.0 36 GTCGATG 35 1.2125929E-7 45.0 1 GGCCGTA 20 7.0346677E-4 45.0 8 ATTCGTT 35 1.2125929E-7 45.0 25 CGCGATA 20 7.0346677E-4 45.0 11 CCGTCGC 20 7.0346677E-4 45.0 19 CGTTATA 20 7.0346677E-4 45.0 4 GCCGACG 40 6.8193913E-9 45.0 1 GTTCGAC 20 7.0346677E-4 45.0 17 TCCGTCG 20 7.0346677E-4 45.0 18 CCGCGAT 20 7.0346677E-4 45.0 10 >>END_MODULE