SRR2934781.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934781.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1306355
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	9548	0.7308886175656694	No Hit
CCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	7608	0.5823838083828669	No Hit
CTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGCT	5962	0.456384367189623	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5733	0.4388546757963953	No Hit
TCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	3474	0.2659307768562144	No Hit
ACTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTGC	2710	0.20744743963164686	No Hit
CGCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTG	2298	0.1759093048979795	No Hit
GCCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTG	1729	0.13235299746240495	No Hit
AGCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTG	1480	0.11329232865492152	No Hit
ACCTGTCTCTTATACACATCTGACGCTCCATCCTTCGTATGCCGTCTTCTG	1415	0.1083166520585905	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATACG	30	2.1657306E-6	45.000004	28
AACGACT	30	2.1657306E-6	45.000004	21
ACCACGT	30	2.1657306E-6	45.000004	38
ATAACGG	30	2.1657306E-6	45.000004	2
TCGACAG	30	2.1657306E-6	45.000004	1
TCCGGAC	20	7.033641E-4	45.0	31
AACCGTA	20	7.033641E-4	45.0	22
AAGTACG	35	1.2121018E-7	45.0	1
AATCCCG	20	7.033641E-4	45.0	1
TCGTTAC	25	3.8910992E-5	45.0	26
CGAGTTA	20	7.033641E-4	45.0	20
GACGTGA	20	7.033641E-4	45.0	10
ACCGAAT	25	3.8910992E-5	45.0	10
CGCGATA	20	7.033641E-4	45.0	11
ATATCGT	20	7.033641E-4	45.0	15
CTAACGG	50	2.1827873E-11	45.0	2
TCTACGG	50	2.1827873E-11	45.0	2
GTTCGGA	20	7.033641E-4	45.0	27
CGTAGTC	25	3.8910992E-5	45.0	22
CGTAGAC	20	7.033641E-4	45.0	10