SRR2934780.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934780.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	653040
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	5815	0.8904508146514762	TruSeq Adapter, Index 14 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	5593	0.856455959818694	TruSeq Adapter, Index 14 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGCT	3594	0.5503491363469313	TruSeq Adapter, Index 21 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3118	0.4774592674261914	No Hit
TCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	2060	0.3154477520519417	TruSeq Adapter, Index 14 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG	1563	0.23934215361999267	No Hit
ACTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC	1496	0.22908244517946832	TruSeq Adapter, Index 21 (95% over 21bp)
GCCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG	976	0.14945485728286168	No Hit
ACCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG	928	0.142104618400098	No Hit
TGGCAAGGGAGAATTTGCAGTAGCATTAATTCAAGCCTACGTATTCACCCT	886	0.1356731593776798	No Hit
GGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG	828	0.12679162072767367	No Hit
AGCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTG	784	0.12005390175180693	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCC	714	0.1093348033811099	No Hit
AAAAGAAGGGAAACTGATTATTCAAGGCCATGGCACTGTTACCAGAAAAAT	703	0.1076503736371432	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTAACA	25	3.888948E-5	45.000004	13
GCCCAAT	25	3.888948E-5	45.000004	9
CTGTACG	55	1.8189894E-12	45.000004	1
ATCTACG	25	3.888948E-5	45.000004	1
GTCGACA	25	3.888948E-5	45.000004	9
CGCGGTC	25	3.888948E-5	45.000004	19
TTGTCGA	25	3.888948E-5	45.000004	7
CGCGAAA	25	3.888948E-5	45.000004	29
AGGCGCC	25	3.888948E-5	45.000004	24
TGCGAAC	25	3.888948E-5	45.000004	1
GTCACAC	25	3.888948E-5	45.000004	27
GGACGTT	25	3.888948E-5	45.000004	8
GAACGAT	25	3.888948E-5	45.000004	43
CCGACGG	50	2.1827873E-11	45.000004	2
TTCGGTC	25	3.888948E-5	45.000004	14
ACGTAAG	50	2.1827873E-11	45.000004	1
CCGCGAA	25	3.888948E-5	45.000004	28
TTCGCGC	25	3.888948E-5	45.000004	21
TGTCGAC	25	3.888948E-5	45.000004	8
CGCCCAT	25	3.888948E-5	45.000004	33