SRR2934778.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934778.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1939398
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC	25617	1.3208737969204878	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCG	24578	1.2673004715896377	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTC	20844	1.0747664997076412	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	14223	0.7333719020025802	No Hit
CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	9376	0.4834489877786818	No Hit
CTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT	6345	0.3271633775016784	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGATGGGTT	5168	0.2664744420691369	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5040	0.25987445588785796	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCT	5035	0.25961664392765177	No Hit
TCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	4357	0.22465734212368996	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTA	3497	0.1803136849682221	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTC	3483	0.1795918114796447	No Hit
ACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	3370	0.17376526117898441	No Hit
GAACTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCT	3283	0.16927933307139637	No Hit
CGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG	2988	0.15406842741923008	No Hit
AGCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG	2164	0.11158101637724696	No Hit
ACCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTG	2124	0.1095185206955973	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACCG	30	2.1662763E-6	45.000004	10
ACGCGAT	20	7.034488E-4	45.0	1
TCCGATC	20	7.034488E-4	45.0	39
CGCTATC	25	3.891801E-5	45.0	26
TACGACG	25	3.891801E-5	45.0	1
TCTCGCA	20	7.034488E-4	45.0	44
ACTACGT	25	3.891801E-5	45.0	17
CTCGCGT	20	7.034488E-4	45.0	43
CGATCGC	25	3.891801E-5	45.0	34
TGCGTCG	20	7.034488E-4	45.0	1
TACCGAC	20	7.034488E-4	45.0	43
TGCGTAG	70	0.0	41.785717	1
CGTTTTT	3250	0.0	41.607693	1
TACGGCT	2905	0.0	41.359726	7
CGACGGT	60	3.6379788E-12	41.250004	28
GTCATCG	55	6.184564E-11	40.909092	43
TTACGCG	110	0.0	40.909092	1
TACGGGT	155	0.0	40.64516	4
TACTCGC	95	0.0	40.26316	45
ACGGCTG	3015	0.0	39.850746	8