SRR2934777.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934777.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	893747
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC	7186	0.8040306708721819	No Hit
CCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC	6280	0.7026597012353608	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3989	0.44632317646940356	No Hit
CTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGCT	3723	0.41656083880561273	Illumina Single End Adapter 2 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC	2516	0.28151143444397575	No Hit
ACTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTGC	1953	0.21851821600520058	No Hit
CGCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTG	1624	0.18170690363156464	No Hit
ACCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTG	1518	0.16984672396103148	No Hit
GCCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTG	1354	0.15149701201794244	No Hit
AGCTGTCTCTTATACACATCTGACGCCCTCATGATCGTATGCCGTCTTCTG	1226	0.13717528562333636	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAGCACG	30	2.1649576E-6	45.000004	1
GTCCGTA	30	2.1649576E-6	45.000004	24
CGTACAT	30	2.1649576E-6	45.000004	35
CCAACGG	30	2.1649576E-6	45.000004	2
AGGTACG	25	3.8901067E-5	45.0	1
CTGTCGG	35	1.2115197E-7	45.0	2
ACTGCGA	20	7.0324447E-4	45.0	27
GATCGAC	20	7.0324447E-4	45.0	11
CGACGCA	20	7.0324447E-4	45.0	21
CGACGAA	20	7.0324447E-4	45.0	14
ACGCACG	35	1.2115197E-7	45.0	1
ACCGCGA	20	7.0324447E-4	45.0	13
CGGTTAG	20	7.0324447E-4	45.0	1
CGTTGCC	20	7.0324447E-4	45.0	21
ATTACCG	20	7.0324447E-4	45.0	35
ATAGCGG	55	1.8189894E-12	45.0	2
CCGTGAT	20	7.0324447E-4	45.0	32
CCTACGG	20	7.0324447E-4	45.0	28
ATTCGCG	20	7.0324447E-4	45.0	1
TACGGAC	20	7.0324447E-4	45.0	27