SRR2934776.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934776.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1164127
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC	9975	0.8568652732906289	TruSeq Adapter, Index 15 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC	8601	0.7388369138418747	TruSeq Adapter, Index 15 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGCT	6680	0.5738205539429976	TruSeq Adapter, Index 21 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4852	0.4167930131334468	No Hit
TCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC	3805	0.32685437241812965	TruSeq Adapter, Index 15 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTG	3085	0.2650054504362496	TruSeq Adapter, Index 21 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTGC	2486	0.21355058339854674	TruSeq Adapter, Index 21 (95% over 22bp)
AGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTG	1571	0.13495091171324092	TruSeq Adapter, Index 21 (95% over 21bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCC	1536	0.1319443668946773	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTC	1466	0.12593127725755007	No Hit
GCCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTG	1444	0.12404144908588152	No Hit
GGCTGTCTCTTATACACATCTGACGCGACAGGTATCGTATGCCGTCTTCTG	1223	0.10505726608866559	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCGAGA	25	3.8908358E-5	45.000004	2
TAAAGCG	25	3.8908358E-5	45.000004	1
GCGCAAA	25	3.8908358E-5	45.000004	1
AACGGAC	25	3.8908358E-5	45.000004	4
GTTAACG	35	1.211938E-7	45.000004	1
CTCGGCT	25	3.8908358E-5	45.000004	41
AGCGCGC	25	3.8908358E-5	45.000004	43
AGACCGC	25	3.8908358E-5	45.000004	22
CGCAGCG	25	3.8908358E-5	45.000004	2
CGTCGCA	25	3.8908358E-5	45.000004	37
TTCGCTC	35	1.211938E-7	45.000004	13
GCGTCGC	25	3.8908358E-5	45.000004	40
TATGTCG	25	3.8908358E-5	45.000004	13
TCGCCGA	20	7.033324E-4	45.0	36
AACGTAC	20	7.033324E-4	45.0	13
CCCTCGT	20	7.033324E-4	45.0	21
CTGTACG	45	3.8562575E-10	45.0	1
TCATTCG	20	7.033324E-4	45.0	29
ATTACGA	20	7.033324E-4	45.0	44
ACGATAA	20	7.033324E-4	45.0	17