##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934775.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 568223 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.21088551501787 33.0 31.0 34.0 30.0 34.0 2 32.40111540715529 34.0 31.0 34.0 30.0 34.0 3 32.3790290079775 34.0 31.0 34.0 30.0 34.0 4 35.94333210728886 37.0 35.0 37.0 35.0 37.0 5 35.839524271280816 37.0 35.0 37.0 35.0 37.0 6 35.754103582572334 37.0 35.0 37.0 35.0 37.0 7 36.04416927861069 37.0 35.0 37.0 35.0 37.0 8 35.84991631806527 37.0 35.0 37.0 35.0 37.0 9 37.48989921210511 39.0 37.0 39.0 35.0 39.0 10 37.36826034848994 39.0 37.0 39.0 34.0 39.0 11 37.26083949435345 39.0 37.0 39.0 34.0 39.0 12 37.06524023138803 39.0 37.0 39.0 34.0 39.0 13 36.9027828862964 39.0 35.0 39.0 33.0 39.0 14 37.96978299012888 40.0 37.0 41.0 33.0 41.0 15 38.06643518477781 40.0 37.0 41.0 33.0 41.0 16 38.19627505398409 40.0 37.0 41.0 34.0 41.0 17 38.17829971683653 40.0 37.0 41.0 34.0 41.0 18 38.16389164113385 40.0 37.0 41.0 34.0 41.0 19 38.13350568350806 40.0 37.0 41.0 34.0 41.0 20 38.03579580552002 40.0 36.0 41.0 34.0 41.0 21 37.96966331880265 40.0 36.0 41.0 34.0 41.0 22 37.89064680591951 40.0 36.0 41.0 34.0 41.0 23 37.745033199993664 39.0 35.0 41.0 33.0 41.0 24 37.51396370791045 39.0 35.0 41.0 33.0 41.0 25 37.43609287198864 39.0 35.0 41.0 33.0 41.0 26 37.53869695524468 39.0 35.0 41.0 33.0 41.0 27 37.62928814919495 39.0 35.0 41.0 33.0 41.0 28 37.56448436617314 39.0 35.0 41.0 33.0 41.0 29 37.434069018677526 39.0 35.0 41.0 33.0 41.0 30 37.35430456000549 39.0 35.0 41.0 33.0 41.0 31 37.19497450824764 39.0 35.0 41.0 33.0 41.0 32 36.96663105858087 39.0 35.0 41.0 32.0 41.0 33 36.925668267563964 39.0 35.0 41.0 32.0 41.0 34 36.82740754950081 39.0 35.0 41.0 31.0 41.0 35 36.746289748919 39.0 35.0 41.0 31.0 41.0 36 36.75385720043011 39.0 35.0 41.0 31.0 41.0 37 36.64984697909095 39.0 35.0 41.0 31.0 41.0 38 36.51043164391445 39.0 35.0 41.0 31.0 41.0 39 36.53890110044824 39.0 35.0 41.0 31.0 41.0 40 36.485105319566436 39.0 35.0 41.0 31.0 41.0 41 36.495317859361556 39.0 35.0 40.0 31.0 41.0 42 36.4495224586122 39.0 35.0 40.0 31.0 41.0 43 36.407496704638845 39.0 35.0 40.0 31.0 41.0 44 36.29855884045524 39.0 35.0 40.0 30.0 41.0 45 36.19374611728142 38.0 35.0 40.0 30.0 41.0 46 36.15308426445251 38.0 35.0 40.0 30.0 41.0 47 36.044537091951575 38.0 35.0 40.0 30.0 41.0 48 36.03736561174046 38.0 35.0 40.0 30.0 41.0 49 36.05151674606625 38.0 35.0 40.0 30.0 41.0 50 35.94032448528131 38.0 35.0 40.0 30.0 41.0 51 34.98184339599066 37.0 34.0 40.0 27.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 0.0 9 9.0 10 9.0 11 6.0 12 8.0 13 6.0 14 7.0 15 25.0 16 32.0 17 58.0 18 118.0 19 246.0 20 440.0 21 686.0 22 1120.0 23 1564.0 24 2207.0 25 3221.0 26 4602.0 27 5291.0 28 5845.0 29 6874.0 30 8286.0 31 10745.0 32 13876.0 33 20641.0 34 39406.0 35 55520.0 36 44209.0 37 69693.0 38 123275.0 39 150095.0 40 102.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 38.54789404863935 23.141090733743617 24.394471888677508 13.916543328939518 2 33.130654690148056 25.562499230055806 24.230979738588548 17.07586634120759 3 31.352831546769487 23.614496421299382 28.37917507739039 16.653496954540735 4 29.49669407961311 26.408645901345068 26.310796993433915 17.783863025607904 5 25.582737763166925 28.78464968859057 25.5482442632558 20.084368284986702 6 25.20348525138898 33.3608460058815 25.889659517478176 15.546009225251353 7 76.41718128270062 6.401536016669512 11.452193944982868 5.729088755646991 8 74.87993270247773 5.9024361914248455 11.756123916138558 7.461507189958871 9 68.85254556749727 7.786555630447905 14.630699566895391 8.730199235159436 10 39.27489735543968 25.0245062237889 21.192383976009417 14.508212444762004 11 30.792664147702574 24.3545227841886 25.421005485522407 19.431807582586412 12 30.221761526724546 20.840409487120372 30.62406836752472 18.31376061863036 13 23.9722784892551 26.59044072485626 30.577783722235814 18.859497063652828 14 17.79107850263013 30.598726204324713 29.15263901672407 22.457556276321093 15 16.239222981118328 27.185453598323196 37.18628073837208 19.389042682186393 16 19.050267236630688 25.67108335987808 33.99809581801511 21.280553585476124 17 18.7269786685861 25.294822631255688 29.291492952590797 26.68670574756742 18 19.324631350719702 26.680194219522967 31.035526545036017 22.959647884721317 19 22.34703628680993 27.471960832278874 27.655163553745627 22.525839327165567 20 24.680451160899857 27.668714571567854 28.787465484501684 18.863368783030605 21 22.667861033432295 27.82006360179014 29.591199229879816 19.920876134897743 22 19.565029926630917 26.429588383433966 27.583712732501148 26.421668957433965 23 19.787477803608795 26.689521543478527 28.92543948414619 24.59756116876649 24 23.08741462418804 24.25913769769967 29.911672002013294 22.741775676098996 25 19.89588594618662 26.754812811167444 28.11449026174583 25.2348109809001 26 18.839258530541706 30.33949699325793 27.572625536101143 23.248618940099224 27 22.553293337298914 28.78570561205724 27.893802257212396 20.76719879343145 28 19.700364117608757 27.20551614418987 30.155766310057846 22.93835342814353 29 20.813307451475918 26.507902707211784 30.444385390946866 22.23440445036544 30 25.902154611833733 27.19002926667875 26.069694468544917 20.838121652942597 31 25.090853414944487 29.79059277783546 23.375153768854833 21.74340003836522 32 24.790619175922128 28.5314040438349 26.378024120811723 20.299952659431245 33 26.806201086545244 26.152408473433848 24.69734593636653 22.344044503654377 34 21.636223806498506 27.043079917567574 28.269886998590344 23.05080927734358 35 21.664381765609626 24.99529234121111 28.816679367079473 24.52364652609979 36 25.451627266055755 26.68776167103408 25.42910089876686 22.431510164143305 37 23.517703436854898 27.366896447345496 29.242040536901886 19.87335957889772 38 21.972007468898656 26.89947432610084 28.50131022503489 22.627207979965615 39 24.38215278156639 24.494784618010886 28.808407966590583 22.31465463383214 40 24.439524623255306 25.035241445700017 29.278469896501903 21.246764034542775 41 19.747352711875443 26.0190101421449 28.1282172668125 26.105419879167158 42 21.63217609987628 24.55250843418869 28.056414471079137 25.758900994855892 43 25.470105926722432 22.59060263312115 28.095659626590262 23.84363181356615 44 23.187727353521417 24.26036960841078 27.736469660678992 24.815433377388807 45 23.36283466174372 24.087374147121817 26.943647124456422 25.60614406667805 46 24.235027445210772 25.124994940366722 27.89890588730129 22.741071727121216 47 20.13681248383117 24.698225872588754 31.51421184992512 23.650749793654956 48 20.72091414814254 22.034834915165348 31.460711727613983 25.78353920907813 49 22.14341904498762 21.0515941804538 32.42371392921441 24.38127284534417 50 21.06479322378714 21.536967000631794 31.484821980102883 25.913417795478182 51 19.195632700541864 21.928186645031968 27.76814736467901 31.108033289747162 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 529.0 1 692.0 2 855.0 3 2794.5 4 4734.0 5 3226.5 6 1719.0 7 1651.5 8 1584.0 9 1547.5 10 1511.0 11 1573.0 12 1635.0 13 1643.0 14 1651.0 15 1599.0 16 1547.0 17 1473.5 18 1400.0 19 1482.0 20 1564.0 21 1748.0 22 1932.0 23 1983.0 24 2034.0 25 2568.5 26 3636.0 27 4169.0 28 5225.0 29 6281.0 30 7251.0 31 8221.0 32 8956.0 33 9691.0 34 10266.0 35 10841.0 36 12328.5 37 13816.0 38 15662.5 39 17509.0 40 19687.0 41 21865.0 42 26610.0 43 31355.0 44 36684.0 45 42013.0 46 49799.0 47 57585.0 48 64821.0 49 72057.0 50 70448.5 51 68840.0 52 55905.5 53 42971.0 54 35517.5 55 28064.0 56 25242.5 57 22421.0 58 21292.0 59 20163.0 60 19952.5 61 19742.0 62 17638.0 63 15534.0 64 12992.0 65 10450.0 66 9039.0 67 7628.0 68 5753.0 69 3878.0 70 3349.5 71 2821.0 72 2440.5 73 2060.0 74 1557.0 75 937.0 76 820.0 77 604.0 78 388.0 79 242.5 80 97.0 81 70.5 82 44.0 83 39.0 84 34.0 85 22.0 86 10.0 87 6.0 88 2.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 568223.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.045918516754853 #Duplication Level Percentage of deduplicated Percentage of total 1 68.28826194022268 18.469187680860742 2 12.596302099364387 6.813571203836746 3 5.562587338425339 4.513358516921519 4 2.996118066745969 3.241310603991542 5 1.7783445339623494 2.404848068013105 6 1.1710762840708266 1.900370025353018 7 0.8492040371407991 1.607725223482652 8 0.6035761261032269 1.3059416580197138 9 0.45224160384405404 1.1008160610707534 >10 4.397303314018121 28.472114495811734 >50 1.1898776425851658 21.383242122935485 >100 0.1058984524357168 4.877722446308833 >500 0.004604280540683339 0.7608599475860855 >1k 0.004604280540683339 3.148931945808113 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 4759 0.8375232963114834 Illumina PCR Primer Index 5 (96% over 25bp) GCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 3510 0.6177152280002746 RNA PCR Primer, Index 33 (96% over 27bp) CTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGCT 2815 0.4954040931113313 Illumina PCR Primer Index 5 (96% over 26bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2712 0.4772774069335455 No Hit CGCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTG 1404 0.2470860912001098 Illumina PCR Primer Index 5 (95% over 24bp) TCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 1394 0.2453262187556646 RNA PCR Primer, Index 33 (96% over 27bp) ACTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 1107 0.19481787960008656 RNA PCR Primer, Index 33 (96% over 27bp) GCCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTG 683 0.12019928795560897 RNA PCR Primer, Index 33 (96% over 26bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 655 0.11527164511116234 No Hit ACCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTG 631 0.11104795124449379 RNA PCR Primer, Index 33 (96% over 26bp) GGCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTG 611 0.10752820635560334 Illumina PCR Primer Index 5 (95% over 24bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCC 581 0.10224858902226766 No Hit CGTTCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTC 571 0.10048871657782243 RNA PCR Primer, Index 33 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5218021797780097 0.0 2 0.0 0.0 0.0 2.5416077842677964 0.0 3 0.0 0.0 0.0 3.5339998556904595 0.0 4 0.0 0.0 0.0 4.539590970446462 0.0 5 0.0 0.0 0.0 7.249266573158778 0.0 6 0.0 0.0 0.0 8.599792687026044 0.0 7 0.0 0.0 0.0 10.033912742004459 0.0 8 0.0 0.0 0.0 12.076772675516478 0.0 9 0.0 0.0 0.0 12.788289104805683 0.0 10 0.0 0.0 0.0 14.36407889156194 0.0 11 0.0 0.0 0.0 16.89618336462973 0.0 12 0.0 0.0 0.0 18.71289968903054 0.0 13 0.0 0.0 0.0 19.44447866418642 0.0 14 0.0 0.0 0.0 19.727642140497657 0.0 15 0.0 0.0 0.0 20.27637036867568 0.0 16 0.0 0.0 0.0 21.472027707431764 0.0 17 0.0 0.0 0.0 22.841736430943484 0.0 18 1.7598724444452266E-4 0.0 0.0 24.422101886055298 0.0 19 1.7598724444452266E-4 0.0 0.0 25.226011618677877 0.0 20 1.7598724444452266E-4 0.0 0.0 26.06652669814492 0.0 21 1.7598724444452266E-4 0.0 0.0 27.065254310367585 0.0 22 1.7598724444452266E-4 0.0 0.0 28.04462332570135 0.0 23 1.7598724444452266E-4 0.0 0.0 29.03490355019068 0.0 24 1.7598724444452266E-4 0.0 0.0 29.77299405339101 0.0 25 1.7598724444452266E-4 0.0 0.0 30.44033768432464 0.0 26 1.7598724444452266E-4 0.0 0.0 31.026199221080457 0.0 27 1.7598724444452266E-4 0.0 0.0 31.60607719152516 0.0 28 1.7598724444452266E-4 0.0 0.0 32.19017885583653 0.0 29 1.7598724444452266E-4 0.0 0.0 32.74506663757011 0.0 30 1.7598724444452266E-4 0.0 0.0 33.41892179654818 0.0 31 1.7598724444452266E-4 0.0 0.0 34.03311727965957 0.0 32 1.7598724444452266E-4 0.0 0.0 34.652768367348735 0.0 33 3.519744888890453E-4 0.0 0.0 35.21680748579343 0.0 34 3.519744888890453E-4 0.0 0.0 35.784718323615905 0.0 35 3.519744888890453E-4 0.0 0.0 36.40067367917173 0.0 36 3.519744888890453E-4 0.0 0.0 36.977911840949766 0.0 37 3.519744888890453E-4 0.0 0.0 37.571164841972255 0.0 38 3.519744888890453E-4 0.0 0.0 38.11338154210583 0.0 39 3.519744888890453E-4 0.0 0.0 38.65207849735051 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TACCCGA 25 3.8883063E-5 45.000004 38 ACCGGCG 100 0.0 45.000004 20 ACACGAG 25 3.8883063E-5 45.000004 35 TACTTTA 25 3.8883063E-5 45.000004 44 CGAGTAG 25 3.8883063E-5 45.000004 27 AACCCTC 25 3.8883063E-5 45.000004 20 CCGGCTA 25 3.8883063E-5 45.000004 24 TAGGTCG 25 3.8883063E-5 45.000004 1 TCCCTAA 25 3.8883063E-5 45.000004 16 ACGGGTC 65 0.0 45.000004 5 GCCGATG 25 3.8883063E-5 45.000004 9 CTATTCG 25 3.8883063E-5 45.000004 44 CACACGA 25 3.8883063E-5 45.000004 34 CACACCG 100 0.0 45.000004 17 TCCTTCG 25 3.8883063E-5 45.000004 35 AGTCGCG 25 3.8883063E-5 45.000004 2 CGAACCG 20 7.030272E-4 45.0 28 TCCGCAC 20 7.030272E-4 45.0 42 CAACGGA 20 7.030272E-4 45.0 14 ACGCATG 20 7.030272E-4 45.0 1 >>END_MODULE