SRR2934774.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934774.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	939151
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	6040	0.6431340647031202	No Hit
CCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	5022	0.5347382902217002	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4732	0.5038593367839677	No Hit
CTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCT	3832	0.40802810197721134	No Hit
TCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	2351	0.25033248114520457	No Hit
CGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	1789	0.1904911989658745	No Hit
ACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGC	1704	0.1814404712341253	No Hit
GCCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	1240	0.13203414573375313	No Hit
TTATTAGGGCGATCTGAGTGGGACTTGACTTAATGAAGGAAAAGAGGGAAA	1037	0.11041887832734032	No Hit
ACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG	1032	0.10988648257841392	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTAA	20	7.032626E-4	45.000004	32
ACTATCG	20	7.032626E-4	45.000004	25
TCGTTGC	30	2.1650758E-6	45.000004	33
GATCGGC	20	7.032626E-4	45.000004	10
CGAAATT	20	7.032626E-4	45.000004	14
CACGCGA	20	7.032626E-4	45.000004	14
CGCGAAA	30	2.1650758E-6	45.000004	28
TCGATAG	30	2.1650758E-6	45.000004	1
CCGCTAG	30	2.1650758E-6	45.000004	3
TGGCACG	40	6.8121153E-9	45.000004	1
ACGATAG	40	6.8121153E-9	45.000004	1
CGGATAC	20	7.032626E-4	45.000004	10
AATTCGT	20	7.032626E-4	45.000004	19
TCCGTCA	20	7.032626E-4	45.000004	28
CCGACCA	20	7.032626E-4	45.000004	23
CATAAGT	30	2.1650758E-6	45.000004	12
TTACGAC	20	7.032626E-4	45.000004	42
CGGTCTA	40	6.8121153E-9	45.000004	31
ACGTAAG	20	7.032626E-4	45.000004	1
GCTACGA	80	0.0	45.000004	10