SRR2934771.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934771.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	681963
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGC	2813	0.4124857213661151	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2613	0.3831586171097259	No Hit
CCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGC	2280	0.3343289885228377	No Hit
CTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGCT	1696	0.24869384409418105	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGC	1112	0.1630586996655244	No Hit
ACTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGC	854	0.12522673517478222	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTAGGCG	45	3.8380676E-10	45.000004	1
GGCACGA	30	2.1641972E-6	45.000004	8
ACGATTG	30	2.1641972E-6	45.000004	1
ACGATAG	30	2.1641972E-6	45.000004	1
CGGTCTA	45	3.8380676E-10	45.000004	31
GAACCGA	30	2.1641972E-6	45.000004	9
GTACGCG	30	2.1641972E-6	45.000004	1
TCACGAC	55	1.8189894E-12	45.0	25
CCTTCGT	20	7.0312666E-4	45.0	13
CTTCGCA	25	3.8891318E-5	45.0	16
ACTATTC	25	3.8891318E-5	45.0	10
CAAACGT	25	3.8891318E-5	45.0	14
GCCCACG	20	7.0312666E-4	45.0	10
CGACGAG	20	7.0312666E-4	45.0	2
TCCGATC	40	6.8084773E-9	45.0	13
CGGCCTA	20	7.0312666E-4	45.0	21
GCGCGGC	20	7.0312666E-4	45.0	25
GGCCGCG	20	7.0312666E-4	45.0	8
GAATCGG	20	7.0312666E-4	45.0	2
TAAACCG	20	7.0312666E-4	45.0	1