SRR2934768.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934768.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1109976
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	4945	0.44550512803880443	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	4222	0.38036858454597217	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3703	0.33361081681045357	No Hit
CTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGCT	2846	0.256401940222131	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	2109	0.19000410819693397	No Hit
CGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTG	1727	0.15558894967098388	No Hit
ACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	1573	0.14171477581497258	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGAC	75	0.0	45.000004	25
TTTAGCG	85	0.0	45.000004	1
CGTAGTC	35	1.2118835E-7	45.000004	27
TCTGCGA	20	7.033184E-4	45.0	22
AACCGTG	20	7.033184E-4	45.0	33
ATTAGCG	40	6.8139343E-9	45.0	1
CAACGAT	20	7.033184E-4	45.0	36
CGTGAGA	25	3.8907187E-5	45.0	2
ATTCGCG	40	6.8139343E-9	45.0	1
CGTCTCA	20	7.033184E-4	45.0	13
CGTCGAA	20	7.033184E-4	45.0	41
CCGGTTA	25	3.8907187E-5	45.0	5
ACCGTCC	20	7.033184E-4	45.0	15
TGTACGA	20	7.033184E-4	45.0	34
CGTCCGA	20	7.033184E-4	45.0	2
TGCGTAA	40	6.8139343E-9	45.0	20
CTATCGG	30	2.1654341E-6	44.999996	2
GGTCCGT	30	2.1654341E-6	44.999996	8
ATCGGTA	30	2.1654341E-6	44.999996	14
TACGTTG	100	0.0	42.75	10