FastQCFastQC Report
Sat 14 Jan 2017
SRR2934766.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934766.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1065210
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC55530.5213056580392599No Hit
CCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC47610.4469541217224772No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT44820.420762103247247No Hit
CTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGCT39230.36828418809436636No Hit
TCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC24370.2287811792979788No Hit
ACTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTGC18390.17264201425071113No Hit
CGCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTG16290.1529275917424733No Hit
ACCTGTCTCTTATACACATCTGACGCTGAGGCATTCGTATGCCGTCTTCTG10830.101670093221055No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAACGG700.045.0000042
AACGCGA302.1653523E-645.00000424
ACTCGAC302.1653523E-645.0000041
CGCGTTG302.1653523E-645.00000425
ACGCGAA253.8906124E-545.035
TCGCCTA207.033055E-445.041
TAATACG253.8906124E-545.01
TCGCAAA207.033055E-445.030
GCGGTTA207.033055E-445.020
GATTTCG207.033055E-445.09
TGAAACG207.033055E-445.01
TCTAGCG406.8139343E-945.01
CCCGTTG207.033055E-445.01
CCGTACG253.8906124E-545.023
CCGTACA253.8906124E-545.031
TCTACGA207.033055E-445.011
GTTCGGT207.033055E-445.011
TTAAGCG406.8139343E-945.01
GAACGTA253.8906124E-545.09
CTACCGT207.033055E-445.021