SRR2934761.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934761.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	925536
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	6867	0.7419484493309823	TruSeq Adapter, Index 23 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	5756	0.621909898696539	TruSeq Adapter, Index 23 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGCT	4097	0.44266241399578193	TruSeq Adapter, Index 20 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3449	0.3726489299173668	No Hit
TCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	2890	0.3122514953497217	TruSeq Adapter, Index 23 (95% over 21bp)
ACTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTGC	2126	0.22970473325726928	TruSeq Adapter, Index 20 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG	1753	0.1894037617121322	No Hit
GCCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG	1307	0.14121546865816131	No Hit
ACCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG	1286	0.1389465131556201	No Hit
AGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG	1173	0.12673737164194585	No Hit
GGCTGTCTCTTATACACATCTGACGCAGCGATACTCGTATGCCGTCTTCTG	944	0.10199495211423434	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTCATAA	20	7.032573E-4	45.000004	10
AACGTAG	40	6.8121153E-9	45.000004	1
CGGAACA	20	7.032573E-4	45.000004	17
TCGCACC	20	7.032573E-4	45.000004	23
CAAACGA	20	7.032573E-4	45.000004	19
ACCGGAT	20	7.032573E-4	45.000004	24
CGAACAA	20	7.032573E-4	45.000004	12
ACGCCTA	35	1.2115925E-7	45.000004	18
CTCGTTA	20	7.032573E-4	45.000004	20
GAATGCG	35	1.2115925E-7	45.000004	1
CGCGGAG	20	7.032573E-4	45.000004	43
CGACGCC	20	7.032573E-4	45.000004	22
CTATCGA	20	7.032573E-4	45.000004	19
CGGCCGT	45	3.8380676E-10	45.000004	17
TAGCGTA	20	7.032573E-4	45.000004	15
CACATCG	20	7.032573E-4	45.000004	38
GGCCGTC	20	7.032573E-4	45.000004	19
CTCCCCG	35	1.2115925E-7	45.000004	13
CGCGCCG	20	7.032573E-4	45.000004	23
CGTCTCG	20	7.032573E-4	45.000004	37