SRR2934760.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934760.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1231406
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	9809	0.7965691250489277	No Hit
CCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	7916	0.6428424094084323	No Hit
CTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGCT	5956	0.4836747587716805	TruSeq Adapter, Index 13 (95% over 23bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5397	0.4382794951461987	No Hit
TCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	4001	0.3249131480600224	No Hit
ACTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTGC	2911	0.23639644438958393	TruSeq Adapter, Index 13 (95% over 22bp)
CGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTG	2277	0.18491058188769585	TruSeq Adapter, Index 13 (95% over 21bp)
GCCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTG	1767	0.1434945095281329	No Hit
AGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTG	1723	0.13992135818730783	TruSeq Adapter, Index 13 (95% over 21bp)
ACCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTG	1570	0.12749653647943895	TruSeq Adapter, Index 13 (95% over 21bp)
GGCTGTCTCTTATACACATCTGACGCCGAGACTTTCGTATGCCGTCTTCTG	1424	0.11564017066670132	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	40	6.8157533E-9	45.000004	1
AGTCCGC	20	7.0334825E-4	45.000004	21
CGACGGC	20	7.0334825E-4	45.000004	18
CGACGGA	20	7.0334825E-4	45.000004	33
GCAACGC	20	7.0334825E-4	45.000004	1
GCAACGA	20	7.0334825E-4	45.000004	2
CGCATCG	20	7.0334825E-4	45.000004	44
TAGCGAG	40	6.8157533E-9	45.000004	1
GCGCCTA	20	7.0334825E-4	45.000004	9
AAGCGTA	20	7.0334825E-4	45.000004	1
GCGCATC	20	7.0334825E-4	45.000004	3
CGTTCCA	20	7.0334825E-4	45.000004	20
ACGATAT	20	7.0334825E-4	45.000004	13
CCGTACG	20	7.0334825E-4	45.000004	19
GAACGAC	20	7.0334825E-4	45.000004	31
CTACCGG	20	7.0334825E-4	45.000004	22
TACTCCA	40	6.8157533E-9	45.000004	36
CCGACGT	20	7.0334825E-4	45.000004	11
CGCAAAA	20	7.0334825E-4	45.000004	19
ACCCACG	20	7.0334825E-4	45.000004	12