##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934759.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 689683 Sequences flagged as poor quality 0 Sequence length 51 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.953155290184043 33.0 31.0 34.0 30.0 34.0 2 32.13677298121021 33.0 31.0 34.0 30.0 34.0 3 32.138459263168734 34.0 31.0 34.0 30.0 34.0 4 35.75432191311081 37.0 35.0 37.0 35.0 37.0 5 35.632747218649726 37.0 35.0 37.0 33.0 37.0 6 35.544461730969154 37.0 35.0 37.0 33.0 37.0 7 35.92375192660976 37.0 35.0 37.0 35.0 37.0 8 35.69401594645656 37.0 35.0 37.0 35.0 37.0 9 37.460395573038625 39.0 37.0 39.0 35.0 39.0 10 37.1873034423061 39.0 37.0 39.0 34.0 39.0 11 37.04261813035844 39.0 37.0 39.0 33.0 39.0 12 36.723573003829294 39.0 35.0 39.0 33.0 39.0 13 36.42918993218623 39.0 35.0 39.0 32.0 39.0 14 37.39945018218515 39.0 35.0 41.0 33.0 41.0 15 37.52208188399598 39.0 35.0 41.0 33.0 41.0 16 37.72211581262696 39.0 35.0 41.0 33.0 41.0 17 37.71827926743156 39.0 35.0 41.0 33.0 41.0 18 37.7173919032367 39.0 36.0 41.0 33.0 41.0 19 37.65116582545894 39.0 36.0 41.0 33.0 41.0 20 37.53037844922957 39.0 35.0 41.0 33.0 41.0 21 37.461588874888896 39.0 35.0 41.0 33.0 41.0 22 37.3781621411576 39.0 35.0 41.0 33.0 41.0 23 37.19856948772117 39.0 35.0 40.0 33.0 41.0 24 36.93558489914932 39.0 35.0 40.0 32.0 41.0 25 36.86678952504266 38.0 35.0 40.0 32.0 41.0 26 37.07424860406883 39.0 35.0 40.0 33.0 41.0 27 37.14903658637374 39.0 35.0 40.0 33.0 41.0 28 37.10997806238518 39.0 35.0 40.0 33.0 41.0 29 37.09391416056362 39.0 35.0 40.0 33.0 41.0 30 36.9584142279859 39.0 35.0 40.0 32.0 41.0 31 36.76471219386298 39.0 35.0 40.0 31.0 41.0 32 36.56962546561246 38.0 35.0 40.0 31.0 41.0 33 36.439423619256964 38.0 35.0 40.0 31.0 41.0 34 36.31378763866878 38.0 35.0 40.0 31.0 41.0 35 36.197360236514456 38.0 35.0 40.0 30.0 41.0 36 36.16275158297363 38.0 35.0 40.0 30.0 41.0 37 35.98220776791656 38.0 35.0 40.0 30.0 41.0 38 35.86272533903257 38.0 35.0 40.0 30.0 41.0 39 35.86054752690729 38.0 35.0 40.0 29.0 41.0 40 35.82010575873264 38.0 35.0 40.0 29.0 41.0 41 35.78019031932062 38.0 35.0 40.0 29.0 41.0 42 35.751709118537065 38.0 35.0 40.0 29.0 41.0 43 35.66900010584573 38.0 35.0 40.0 29.0 41.0 44 35.55072402828546 38.0 35.0 40.0 29.0 41.0 45 35.45366494461948 38.0 35.0 40.0 28.0 41.0 46 35.38648770522109 38.0 34.0 40.0 28.0 41.0 47 35.192353588532704 37.0 34.0 40.0 28.0 41.0 48 35.19377018137318 37.0 34.0 40.0 28.0 41.0 49 35.18967264670871 37.0 34.0 40.0 28.0 41.0 50 34.94716123204429 36.0 34.0 39.0 28.0 41.0 51 33.87567041669869 36.0 33.0 39.0 24.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 5.0 10 9.0 11 6.0 12 12.0 13 10.0 14 14.0 15 21.0 16 55.0 17 95.0 18 238.0 19 454.0 20 739.0 21 1249.0 22 1817.0 23 2728.0 24 3872.0 25 5305.0 26 6937.0 27 8039.0 28 8955.0 29 10321.0 30 12306.0 31 15914.0 32 20794.0 33 29649.0 34 56312.0 35 79521.0 36 57062.0 37 85452.0 38 141505.0 39 140216.0 40 70.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 41.890984698767404 21.408096183319003 24.003926441568083 12.69699267634551 2 31.390798381285318 25.42892894271716 24.903035162531193 18.277237513466332 3 29.72713551008217 25.690788376689 28.639389400637683 15.942686712591147 4 26.469551953578673 26.085897434038536 29.14962381267916 18.29492679970363 5 25.88928536733543 27.239470887349693 27.33038221907746 19.540861526237414 6 23.61302221455364 33.72288428161924 26.62049086319367 16.043602640633452 7 74.49233923411191 5.784831582045665 13.635249817669855 6.087579366172575 8 73.12388445126238 6.535176305636067 12.181248486623565 8.159690756477977 9 68.80088388433526 5.654771829956661 15.012259255339048 10.532085030369025 10 42.65060904792492 21.65864607363093 21.181180339373306 14.50956453907085 11 33.59934926625711 22.175115234100303 24.26361096329763 19.96192453634496 12 28.719426171153994 20.53610136830979 30.860409782465275 19.88406267807094 13 21.806250117807746 28.724210978087033 33.52409730267384 15.945441601431382 14 18.048001763128855 32.9947236629002 28.842526204067664 20.114748369903275 15 14.650498852371307 24.632476079590187 42.19141257650254 18.525612491535966 16 15.68372716160903 24.326538424174586 36.16386078821719 23.82587362599919 17 16.361719804605883 24.134421176105544 29.5935958984055 29.910263120883073 18 19.90175196430824 24.61696170559518 33.73984859710911 21.741437732987475 19 20.598158864289825 26.275549781566315 28.533253683213882 24.59303767092998 20 23.64231103274983 26.60106164716254 28.930827641104685 20.825799678982953 21 21.128112480661404 28.56979220888437 29.639849032091554 20.662246278362666 22 17.954045554261885 25.798664023906635 27.34198175103635 28.905308670795133 23 17.19920601203741 28.373325136330752 28.56979220888437 25.857676642747464 24 20.559590420526533 24.013786043733134 30.741369585737218 24.685253950003116 25 17.522542965391345 27.041843861600185 29.164848198375193 26.270764974633277 26 18.737013961486653 27.61080090418352 29.501379619332358 24.15080551499747 27 21.50480728102621 27.422598498150602 27.084762129848063 23.98783209097513 28 18.002908582638693 25.895955098211786 31.751253836907683 24.349882482241842 29 22.206288976239808 23.6468058513839 29.718000878664547 24.42890429371175 30 24.308414155488826 25.46619243913508 25.938873366459664 24.28652003891643 31 27.207282186163788 27.77594924044815 21.839453778040056 23.177314795348007 32 26.281494541695245 29.43671222866157 22.764081469312714 21.51771176033047 33 25.21926740256031 27.60253623766281 22.291690530287102 24.88650582948978 34 23.43351945748989 27.126665439049535 26.4984057893264 22.941409314134177 35 20.9210608351953 26.474046772212738 27.351696359051914 25.25319603354005 36 27.4298482056249 27.068087802657164 24.785299913148503 20.71676407856943 37 22.07564924755286 29.183697437808387 28.25979471728316 20.480858597355596 38 21.720268587162508 30.685691832334566 25.355996885525666 22.23804269497726 39 23.549369782929258 30.09803054446753 26.395024960742834 19.957574711860378 40 24.94725837812444 24.1109321238888 29.263734208324692 21.678075289662065 41 19.24202858414663 27.247590559720912 26.26598016770023 27.244400688432226 42 23.371316967360368 23.611137290610323 28.256749840143954 24.76079590188536 43 25.048029312017263 23.207908560889567 26.675588639998377 25.068473487094796 44 22.996072108490424 25.447343199701894 26.2819295241437 25.274655167663983 45 22.032440991006013 24.61029197471882 25.62771592166256 27.729551112612604 46 25.933943565377138 25.04643437637291 27.103756363430737 21.915865694819214 47 19.01598270509785 25.234781776555316 31.78199259659873 23.96724292174811 48 20.626142735140636 22.878336859107733 30.264048845629077 26.23147156012255 49 22.205998987940838 20.14621210034175 33.61051381576753 24.037275095949877 50 21.547435560975114 21.47102364419596 31.072826211462367 25.90871458336656 51 19.779521896291484 21.56976465999597 26.475351719558116 32.17536172415443 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 462.0 1 526.5 2 591.0 3 2663.0 4 4735.0 5 3245.5 6 1756.0 7 1883.0 8 2010.0 9 2059.5 10 2109.0 11 2276.5 12 2444.0 13 2367.0 14 2290.0 15 2269.0 16 2248.0 17 2270.5 18 2293.0 19 2151.5 20 2010.0 21 1900.5 22 1791.0 23 1902.5 24 2014.0 25 2157.0 26 2771.5 27 3243.0 28 3325.5 29 3408.0 30 4145.5 31 4883.0 32 5971.5 33 7060.0 34 8499.5 35 9939.0 36 11051.5 37 12164.0 38 13650.5 39 15137.0 40 19911.0 41 24685.0 42 32026.5 43 39368.0 44 47667.0 45 55966.0 46 71634.5 47 87303.0 48 93133.5 49 98964.0 50 97536.5 51 96109.0 52 78964.5 53 61820.0 54 51441.5 55 41063.0 56 34931.5 57 28800.0 58 24736.5 59 20673.0 60 17864.5 61 15056.0 62 13760.5 63 12465.0 64 10357.0 65 8249.0 66 7026.0 67 5803.0 68 4772.5 69 3742.0 70 2712.5 71 1683.0 72 1375.0 73 1067.0 74 971.0 75 727.5 76 580.0 77 401.5 78 223.0 79 197.0 80 171.0 81 140.0 82 109.0 83 61.0 84 13.0 85 9.0 86 5.0 87 3.5 88 2.0 89 1.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 689683.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.233035168118008 #Duplication Level Percentage of deduplicated Percentage of total 1 70.31890684982135 19.853161700746206 2 11.727381067848397 6.621991242369702 3 5.329280924659092 4.513853273000419 4 3.0326279602984427 3.4248116741969565 5 1.898880998312132 2.6805587002708724 6 1.2439835406699282 2.1072858631376423 7 0.8730260195458946 1.7253722018764923 8 0.6337767749430328 1.4314753580562443 9 0.5189998575104846 1.3187647106407572 >10 3.1191531155765464 17.872375611057205 >50 0.9871902282748862 20.102230251944235 >100 0.305386052759313 12.092576343026783 >500 0.00570330489024184 1.1368125492373227 >1k 0.005184822627492582 4.149819592882934 >5k 5.184822627492581E-4 0.9689109275562503 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGC 6619 0.9597162754482855 Illumina PCR Primer Index 9 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGC 4758 0.6898821632547127 RNA PCR Primer, Index 17 (95% over 24bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGC 4061 0.5888212410629231 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCG 3631 0.5264737567839138 No Hit CTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGCT 3508 0.5086394763971274 RNA PCR Primer, Index 17 (96% over 25bp) GAATCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTC 3399 0.4928351141031459 RNA PCR Primer, Index 17 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2795 0.4052586478135607 No Hit TCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGC 2091 0.3031827665753687 Illumina PCR Primer Index 9 (95% over 23bp) ACTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTGC 1563 0.22662585564672466 Illumina PCR Primer Index 9 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTG 1498 0.21720123593013024 RNA PCR Primer, Index 17 (95% over 23bp) GCCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTG 1045 0.1515188862129413 Illumina PCR Primer Index 9 (95% over 22bp) ACCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTG 937 0.13585951806844593 Illumina PCR Primer Index 9 (95% over 22bp) AGCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTG 882 0.1278848398467122 RNA PCR Primer, Index 17 (95% over 23bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCGAGATAT 842 0.12208507386726945 No Hit GAATGACTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCT 800 0.11599531958885459 No Hit CGTTCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTC 744 0.10787564721763476 No Hit GGCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCCGTCTTCTG 713 0.10338082858356665 RNA PCR Primer, Index 17 (95% over 23bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAGATATCGTATGCC 695 0.10077093389281742 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.349824484582047E-4 0.0 0.0 0.5393782360881738 0.0 2 4.349824484582047E-4 0.0 0.0 2.856384744875544 0.0 3 4.349824484582047E-4 0.0 0.0 3.9726947017687837 0.0 4 4.349824484582047E-4 0.0 0.0 5.17614614250315 0.0 5 4.349824484582047E-4 0.0 0.0 8.623382046534422 0.0 6 4.349824484582047E-4 0.0 0.0 10.265730777763117 0.0 7 4.349824484582047E-4 0.0 0.0 12.161964264741918 0.0 8 4.349824484582047E-4 0.0 0.0 15.056192482633326 0.0 9 4.349824484582047E-4 0.0 0.0 16.07057155243786 0.0 10 4.349824484582047E-4 0.0 0.0 18.68365611447578 0.0 11 4.349824484582047E-4 0.0 0.0 21.657341126285555 0.0 12 4.349824484582047E-4 0.0 0.0 24.504301251444502 0.0 13 4.349824484582047E-4 0.0 0.0 25.429073936866647 0.0 14 4.349824484582047E-4 0.0 0.0 25.743421252952444 0.0 15 4.349824484582047E-4 0.0 0.0 26.415904118268827 0.0 16 4.349824484582047E-4 0.0 0.0 27.79653840967517 0.0 17 4.349824484582047E-4 0.0 0.0 29.401913632784918 0.0 18 4.349824484582047E-4 0.0 0.0 31.321926160279432 0.0 19 4.349824484582047E-4 0.0 0.0 32.39879770851246 0.0 20 5.799765979442729E-4 0.0 0.0 33.29645648798071 0.0 21 5.799765979442729E-4 0.0 0.0 34.353028855285686 0.0 22 5.799765979442729E-4 0.0 0.0 35.387272123569815 0.0 23 5.799765979442729E-4 0.0 0.0 36.47632318035967 0.0 24 5.799765979442729E-4 0.0 0.0 37.292930230265206 0.0 25 5.799765979442729E-4 0.0 0.0 37.97512770359716 0.0 26 5.799765979442729E-4 0.0 0.0 38.677044381259215 0.0 27 5.799765979442729E-4 0.0 0.0 39.29384949317295 0.0 28 5.799765979442729E-4 0.0 0.0 39.94458323606642 0.0 29 5.799765979442729E-4 0.0 0.0 40.58922722468149 0.0 30 5.799765979442729E-4 0.0 0.0 41.378140392035185 0.0 31 5.799765979442729E-4 0.0 0.0 42.08527685907874 0.0 32 5.799765979442729E-4 0.0 0.0 42.68787254434284 0.0 33 5.799765979442729E-4 0.0 0.0 43.27683877955525 0.0 34 5.799765979442729E-4 0.0 0.0 43.903793481933 0.0 35 5.799765979442729E-4 0.0 0.0 44.59034077974954 0.0 36 5.799765979442729E-4 0.0 0.0 45.18655672243625 0.0 37 5.799765979442729E-4 0.0 0.0 45.736954513885365 0.0 38 5.799765979442729E-4 0.0 0.0 46.31780107672655 0.0 39 5.799765979442729E-4 0.0 0.0 46.9105371598256 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCACGAT 20 7.031321E-4 45.000004 16 GTGCATG 50 2.1827873E-11 45.000004 1 CGGGTTC 65 0.0 45.000004 6 GTTTGCG 20 7.031321E-4 45.000004 1 TTAGGTT 20 7.031321E-4 45.000004 25 AACGTAG 20 7.031321E-4 45.000004 1 TTAGGCG 25 3.889176E-5 45.000004 1 AACCGGT 25 3.889176E-5 45.000004 14 AACCGGC 25 3.889176E-5 45.000004 12 TCGTTAA 25 3.889176E-5 45.000004 41 GTTCTCG 20 7.031321E-4 45.000004 11 GATCGCG 25 3.889176E-5 45.000004 9 ACGTTAG 25 3.889176E-5 45.000004 1 TTAGCAA 25 3.889176E-5 45.000004 36 TAGACGG 30 2.1642336E-6 45.000004 2 ACCGCCC 20 7.031321E-4 45.000004 45 CATGACG 20 7.031321E-4 45.000004 1 CGGTTGC 20 7.031321E-4 45.000004 43 GACGTAA 30 2.1642336E-6 45.000004 45 CGGTTAG 25 3.889176E-5 45.000004 5 >>END_MODULE