SRR2934758.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934758.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2401581
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	15804	0.6580664986939854	No Hit
CCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGC	15379	0.6403698230457353	No Hit
CGCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTG	11870	0.49425774104641895	No Hit
GCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGC	11580	0.4821823623687896	No Hit
CTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGCT	10913	0.4544089914102418	Illumina Single End Adapter 2 (95% over 21bp)
CGTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTC	9705	0.4041087933323923	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTT	8696	0.3620948033816057	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCT	6356	0.2646589892241819	No Hit
TCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGC	5251	0.2186476325387318	No Hit
CGTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCT	4496	0.18721000874007582	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCC	4252	0.1770500349561393	No Hit
ACTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTGC	3834	0.15964483396562512	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTC	3039	0.12654164069419271	No Hit
ACCTGTCTCTTATACACATCTGACGCGGAAATGGTCGTATGCCGTCTTCTG	2476	0.10309875036486381	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATCCG	25	3.8920793E-5	45.000004	27
TCACCCG	20	7.034824E-4	45.0	12
ACGTTCG	20	7.034824E-4	45.0	1
CGCCTAG	20	7.034824E-4	45.0	37
TCGTCGA	20	7.034824E-4	45.0	24
GACGGTC	75	0.0	45.0	29
CGTCGAC	20	7.034824E-4	45.0	25
CGTTTTT	11340	0.0	43.92857	1
TGTTACG	125	0.0	43.199997	1
CGTTTTC	755	0.0	42.615894	1
TATCGAG	125	0.0	41.399998	1
ACGCGAG	60	3.6379788E-12	41.249996	1
AACGTTC	60	3.6379788E-12	41.249996	26
CGTTCTG	1120	0.0	40.982143	1
AAGTACG	165	0.0	40.909092	1
TCGTTAG	55	6.184564E-11	40.909092	1
CGTTTCT	1050	0.0	39.428574	1
CTCGATC	140	0.0	38.57143	16
ACCAACG	35	6.2511317E-6	38.57143	1
CCAACGT	35	6.2511317E-6	38.57143	17