SRR2934748.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934748.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1780701
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGC	4938	0.2773065214204967	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4876	0.27382474654644434	No Hit
GCTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGC	4611	0.25894296684283324	No Hit
CTGTCTCTTATACACATCTGACGCGACATCACTCGTATGCCGTCTTCTGCT	2626	0.14747001321389724	TruSeq Adapter, Index 13 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTACAT	30	2.1661763E-6	45.000004	35
CGACCGT	20	7.034333E-4	45.0	26
CCGTCTA	25	3.8916725E-5	45.0	13
TACGCAC	20	7.034333E-4	45.0	30
CGTAGAT	20	7.034333E-4	45.0	34
CAATCGA	25	3.8916725E-5	45.0	45
GCGTCTA	20	7.034333E-4	45.0	33
AACACGT	140	0.0	41.785713	41
CGCAATA	55	6.184564E-11	40.909092	22
TATAGCG	85	0.0	39.705883	1
CGTTTTT	3185	0.0	39.41915	1
TAAGACG	70	0.0	38.571426	1
ACGACTA	35	6.250224E-6	38.571426	27
AAATGCG	135	0.0	38.333336	1
ATATGCG	60	1.5643309E-10	37.500004	1
CCGTAGT	30	1.1401738E-4	37.500004	32
GACGAAC	30	1.1401738E-4	37.500004	40
GTGCGAT	30	1.1401738E-4	37.500004	38
TCGAATA	30	1.1401738E-4	37.500004	20
TAGCGCG	140	0.0	36.964283	1