SRR2934744.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934744.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	842160
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	9862	1.1710363826351287	No Hit
GCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGC	4382	0.5203286786358886	TruSeq Adapter, Index 27 (95% over 23bp)
CCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGC	3119	0.3703571767835091	TruSeq Adapter, Index 27 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGCT	2138	0.25387099838510496	TruSeq Adapter, Index 20 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGC	1714	0.20352427092239006	TruSeq Adapter, Index 27 (95% over 23bp)
ACTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTGC	1206	0.14320319179253346	TruSeq Adapter, Index 20 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTG	968	0.11494252873563218	No Hit
ACCTGTCTCTTATACACATCTGACGCCCACTTTGTCGTATGCCGTCTTCTG	849	0.10081219720718153	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGACTT	25	3.889914E-5	45.000004	9
GTACAAC	25	3.889914E-5	45.000004	10
ATCGTCC	25	3.889914E-5	45.000004	30
TGCGACG	25	3.889914E-5	45.000004	1
TCGCTAC	25	3.889914E-5	45.000004	25
AGCGCGT	25	3.889914E-5	45.000004	11
CAGCTCG	25	3.889914E-5	45.000004	27
TAGATCC	25	3.889914E-5	45.000004	17
ACGTAAC	50	2.1827873E-11	45.000004	11
CGCGTAA	25	3.889914E-5	45.000004	31
CGTCACA	25	3.889914E-5	45.000004	29
TACGTCA	25	3.889914E-5	45.000004	18
ATAGCGA	20	7.032213E-4	45.0	12
CGCGCAT	20	7.032213E-4	45.0	24
CGTCTAG	20	7.032213E-4	45.0	17
TAACGAG	35	1.2114106E-7	45.0	1
ACTTACG	20	7.032213E-4	45.0	1
GACCCGT	20	7.032213E-4	45.0	10
CGTTAAG	20	7.032213E-4	45.0	41
CTAACGG	35	1.2114106E-7	45.0	2