FastQCFastQC Report
Sat 14 Jan 2017
SRR2934743.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934743.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences851694
Sequences flagged as poor quality0
Sequence length51
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGC243052.8537244597237974No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCG209152.4556941812434983No Hit
GAATCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTC175142.0563723590867142No Hit
GCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGC88041.0337045934337918No Hit
CCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGC62530.7341838735508293No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGAGTCGAT52850.6205280300201715No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCT45340.532350820834713No Hit
CTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGCT42990.5047587513825388Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40180.4717656811014284No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGAGTCGATCGTA33790.39673873480381455No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTC29130.34202424814546073No Hit
GAACTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCT28820.3383844432390037No Hit
TCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGC20850.24480623322460882No Hit
CGCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTG18140.2129872935584846No Hit
ACTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTGC17780.20876042334453454No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATG11550.13561208603089842No Hit
GCCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTG11330.13302899867792892No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCTGAGTCGA10450.12269664926605095No Hit
ACCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTCTG10370.12175734477406204No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT10100.11858719211359947No Hit
GAATGATCCGGCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGC9720.11412549577665218No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCTGAGTCGATCGT9360.1098986255627021No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCC9150.10743295127123122No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTAT9050.10625882065624509No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGAGTCGATCGTATGCCGTCTTC9000.105671755348752No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CTAGAAT302.1648375E-645.00000441
AGATCGA302.1648375E-645.00000413
TACCAGT302.1648375E-645.00000425
GAGTATA302.1648375E-645.00000413
CGACCGA302.1648375E-645.00000425
AGTATAT302.1648375E-645.00000414
GTTCGTT302.1648375E-645.00000428
ACTCGTT302.1648375E-645.00000424
GACGGAC302.1648375E-645.0000044
ACCGTCT302.1648375E-645.00000438
GACGCAC302.1648375E-645.00000414
CGTTTAA302.1648375E-645.00000432
AATCGTT302.1648375E-645.00000422
GACTAGA302.1648375E-645.00000430
GTGCCAA302.1648375E-645.0000041
ACGCGAT253.8899514E-545.044
TCCGGAT253.8899514E-545.045
CGGGTTC207.032256E-445.06
AACGTGC207.032256E-445.022
GTGCAAG700.045.01