SRR2934742.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934742.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	491520
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC	2851	0.5800374348958334	TruSeq Adapter, Index 13 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC	2821	0.5739339192708334	TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2141	0.43558756510416663	No Hit
CTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGCT	2082	0.42358398437500006	TruSeq Adapter, Index 19 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC	1408	0.2864583333333333	TruSeq Adapter, Index 13 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTG	924	0.18798828125	No Hit
ACTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC	920	0.18717447916666669	TruSeq Adapter, Index 19 (95% over 21bp)
ACCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTG	661	0.13448079427083334	No Hit
GCCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTG	616	0.12532552083333334	No Hit
AGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTG	493	0.10030110677083333	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCTA	20	7.02934E-4	45.000004	37
AAGTACG	20	7.02934E-4	45.000004	1
TCGTTAG	20	7.02934E-4	45.000004	1
GTACACG	20	7.02934E-4	45.000004	1
CGTGCGA	20	7.02934E-4	45.000004	2
TAGCGCG	20	7.02934E-4	45.000004	1
GAATCGT	20	7.02934E-4	45.000004	45
GTTAGCG	35	1.2100281E-7	45.000004	1
GTCTACG	20	7.02934E-4	45.000004	1
TCTAGCG	20	7.02934E-4	45.000004	1
ACGATTA	20	7.02934E-4	45.000004	11
AATGCCG	20	7.02934E-4	45.000004	37
ATATCGG	20	7.02934E-4	45.000004	2
TCGTGGT	20	7.02934E-4	45.000004	1
TCATGCG	35	1.2100281E-7	45.000004	1
ACTACGG	20	7.02934E-4	45.000004	2
TCCACGG	35	1.2100281E-7	45.000004	2
TATTACG	20	7.02934E-4	45.000004	1
CTCGCCT	20	7.02934E-4	45.000004	36
AATTACG	20	7.02934E-4	45.000004	1