##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2934742.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 491520 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.12763468424479 33.0 31.0 34.0 30.0 34.0 2 32.293922932942706 34.0 31.0 34.0 30.0 34.0 3 32.28111572265625 34.0 31.0 34.0 30.0 34.0 4 35.88071085611979 37.0 35.0 37.0 35.0 37.0 5 35.750482177734376 37.0 35.0 37.0 35.0 37.0 6 35.70614827473958 37.0 35.0 37.0 33.0 37.0 7 36.06855875651042 37.0 35.0 37.0 35.0 37.0 8 35.719502766927086 37.0 35.0 37.0 35.0 37.0 9 37.538429768880206 39.0 38.0 39.0 35.0 39.0 10 37.25702107747396 39.0 37.0 39.0 34.0 39.0 11 37.17726236979167 39.0 37.0 39.0 34.0 39.0 12 37.08776652018229 39.0 37.0 39.0 34.0 39.0 13 37.08224690755208 39.0 37.0 39.0 33.0 39.0 14 38.184086100260416 40.0 37.0 41.0 33.0 41.0 15 38.255000813802084 40.0 37.0 41.0 34.0 41.0 16 38.32835896809896 40.0 37.0 41.0 34.0 41.0 17 38.28602091471354 40.0 37.0 41.0 34.0 41.0 18 38.33519287109375 40.0 37.0 41.0 34.0 41.0 19 38.255141194661455 40.0 37.0 41.0 34.0 41.0 20 38.21196492513021 40.0 37.0 41.0 34.0 41.0 21 38.108046468098955 40.0 36.0 41.0 34.0 41.0 22 38.071608479817705 40.0 36.0 41.0 34.0 41.0 23 37.9253662109375 40.0 36.0 41.0 34.0 41.0 24 37.63364054361979 39.0 36.0 41.0 33.0 41.0 25 37.55296223958333 39.0 35.0 41.0 33.0 41.0 26 37.750362141927084 39.0 36.0 41.0 33.0 41.0 27 37.87926025390625 40.0 36.0 41.0 34.0 41.0 28 37.86243693033854 40.0 36.0 41.0 34.0 41.0 29 37.88491617838542 40.0 36.0 41.0 34.0 41.0 30 37.748313395182294 40.0 36.0 41.0 33.0 41.0 31 37.700968424479164 40.0 36.0 41.0 33.0 41.0 32 37.571248372395836 40.0 36.0 41.0 33.0 41.0 33 37.42296549479167 40.0 36.0 41.0 33.0 41.0 34 37.36676839192708 40.0 36.0 41.0 33.0 41.0 35 37.31851603190104 40.0 36.0 41.0 33.0 41.0 36 37.249273681640624 40.0 35.0 41.0 33.0 41.0 37 37.1560546875 39.0 35.0 41.0 32.0 41.0 38 37.0800537109375 39.0 35.0 41.0 32.0 41.0 39 37.1452392578125 39.0 35.0 41.0 32.0 41.0 40 37.06431477864583 39.0 35.0 41.0 32.0 41.0 41 37.02939046223958 39.0 35.0 41.0 32.0 41.0 42 36.969040934244795 39.0 35.0 41.0 32.0 41.0 43 36.904754638671875 39.0 35.0 41.0 32.0 41.0 44 36.853399658203124 39.0 35.0 41.0 31.0 41.0 45 36.76902669270833 39.0 35.0 41.0 31.0 41.0 46 36.7366943359375 39.0 35.0 41.0 31.0 41.0 47 36.680092366536456 39.0 35.0 41.0 31.0 41.0 48 36.65023396809896 39.0 35.0 41.0 31.0 41.0 49 36.61455078125 39.0 35.0 41.0 31.0 41.0 50 36.53994140625 39.0 35.0 41.0 31.0 41.0 51 35.62240397135417 38.0 34.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 6.0 11 4.0 12 2.0 13 3.0 14 3.0 15 6.0 16 23.0 17 35.0 18 69.0 19 147.0 20 232.0 21 420.0 22 651.0 23 984.0 24 1566.0 25 2410.0 26 3405.0 27 4197.0 28 4752.0 29 5367.0 30 6391.0 31 8407.0 32 11220.0 33 16080.0 34 28473.0 35 42895.0 36 37367.0 37 57057.0 38 104701.0 39 154564.0 40 81.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 37.869466145833336 22.263997395833332 27.044677734375 12.821858723958332 2 31.339518229166668 23.554280598958332 27.146402994791668 17.959798177083332 3 29.285481770833332 23.306070963541668 30.561930338541664 16.846516927083332 4 27.20458984375 25.237833658854164 29.607747395833332 17.9498291015625 5 24.345296223958332 28.433837890625004 28.546752929687504 18.674112955729168 6 24.969075520833332 32.081298828125 26.720784505208332 16.228841145833332 7 79.12150065104167 4.975992838541667 10.13671875 5.765787760416666 8 79.37540690104167 3.6120605468749996 10.2301025390625 6.782430013020833 9 74.98779296875 5.310465494791667 12.7386474609375 6.963094075520833 10 37.70345052083333 27.031656901041668 20.141194661458332 15.123697916666668 11 26.139933268229164 26.962890625000004 27.843424479166668 19.053751627604168 12 23.475748697916668 23.6810302734375 33.53373209635417 19.309488932291664 13 20.6134033203125 26.121419270833336 34.85616048177083 18.409016927083332 14 17.469482421875 29.651896158854168 32.713623046875 20.164998372395836 15 16.376139322916668 25.870361328125004 38.4649658203125 19.288533528645832 16 17.5140380859375 25.961100260416664 35.1165771484375 21.408284505208332 17 18.248697916666668 25.6243896484375 30.519816080729168 25.607096354166664 18 19.192708333333332 25.611368815104168 34.089762369791664 21.106160481770832 19 19.4390869140625 26.871337890625004 31.6650390625 22.0245361328125 20 20.680745442708336 27.474568684895832 30.946248372395836 20.8984375 21 19.705810546875 27.997233072916668 32.34375 19.953206380208332 22 19.035441080729168 25.743204752604164 29.558919270833332 25.662434895833336 23 17.508341471354168 26.682535807291668 31.027832031250004 24.781290690104164 24 20.349527994791668 24.3017578125 31.662190755208336 23.6865234375 25 16.805216471354168 27.484334309895836 30.737915039062504 24.9725341796875 26 17.374674479166664 28.235066731770836 32.0050048828125 22.38525390625 27 20.81298828125 27.186279296875 30.4058837890625 21.5948486328125 28 16.800130208333332 26.043294270833332 32.8070068359375 24.349568684895832 29 18.810628255208332 24.367472330729168 32.5811767578125 24.24072265625 30 23.46435546875 25.313720703124996 28.789876302083332 22.432047526041668 31 21.158040364583332 26.500244140625 26.5667724609375 25.774943033854164 32 20.914103190104168 27.808227539062504 28.513387044270832 22.7642822265625 33 23.162841796875 25.0811767578125 28.069254557291668 23.686726888020836 34 18.941446940104168 23.34228515625 30.663655598958332 27.0526123046875 35 19.273274739583332 23.997395833333332 31.667073567708332 25.062255859375 36 23.1768798828125 22.688191731770832 31.702473958333332 22.432454427083336 37 20.310262044270832 24.715576171875 31.2481689453125 23.725992838541668 38 19.7711181640625 27.030029296875004 28.812459309895832 24.386393229166668 39 21.744588216145832 23.907470703125 31.163126627604164 23.184814453125 40 21.933797200520832 21.927693684895832 32.152913411458336 23.985595703125 41 18.441365559895832 22.582804361979168 31.780598958333332 27.195231119791668 42 20.932210286458332 21.987101236979168 33.473917643229164 23.606770833333332 43 23.259073893229168 22.050374348958332 31.453043619791664 23.237508138020832 44 21.1041259765625 24.1094970703125 28.10546875 26.680908203124996 45 21.786295572916668 23.164469401041668 27.666015625 27.383219401041664 46 24.019571940104168 22.327880859375 29.9700927734375 23.682454427083332 47 18.601888020833332 22.374267578125 34.140218098958336 24.883626302083332 48 19.765421549479168 20.638631184895832 33.316650390625 26.279296875000004 49 21.737874348958332 19.012044270833332 34.7314453125 24.518636067708332 50 20.400797526041668 20.184326171875 32.4847412109375 26.930135091145836 51 19.9609375 19.798177083333332 29.501139322916664 30.739746093749996 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 176.0 1 221.5 2 267.0 3 1847.5 4 3428.0 5 2276.5 6 1125.0 7 1168.0 8 1211.0 9 1238.0 10 1265.0 11 1362.5 12 1460.0 13 1413.0 14 1366.0 15 1342.5 16 1319.0 17 1272.0 18 1225.0 19 1405.5 20 1586.0 21 1644.0 22 1702.0 23 1911.5 24 2121.0 25 2317.5 26 3344.5 27 4175.0 28 5155.0 29 6135.0 30 6952.5 31 7770.0 32 8745.0 33 9720.0 34 10632.5 35 11545.0 36 12956.0 37 14367.0 38 15744.0 39 17121.0 40 19115.5 41 21110.0 42 25551.5 43 29993.0 44 35183.5 45 40374.0 46 47151.0 47 53928.0 48 60378.0 49 66828.0 50 64725.0 51 62622.0 52 50348.5 53 38075.0 54 31565.0 55 25055.0 56 21199.5 57 17344.0 58 15306.5 59 13269.0 60 11937.0 61 10605.0 62 9028.0 63 7451.0 64 6180.5 65 4910.0 66 4173.0 67 3436.0 68 2691.0 69 1946.0 70 1537.5 71 1129.0 72 895.0 73 661.0 74 630.0 75 451.0 76 303.0 77 215.5 78 128.0 79 116.5 80 105.0 81 75.5 82 46.0 83 25.5 84 5.0 85 2.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 491520.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.49660630216732 #Duplication Level Percentage of deduplicated Percentage of total 1 69.39940967456822 22.55245293797266 2 12.700691725136625 8.254587575139185 3 5.1688353457730125 5.0390882181693755 4 2.729940374277723 3.5485519028517793 5 1.5151153419340404 2.461805338460207 6 1.0719195712710499 2.090024897710998 7 0.7192159528673163 1.6360454366597117 8 0.5500331095238035 1.4299367530681542 9 0.483411784392126 1.4138318195297201 >10 5.373813898567047 41.05383518947963 >50 0.2300905773512442 4.59500106303484 >100 0.051895429130851274 2.994116102802627 >500 0.0025009845364265676 0.6341365605895086 >1k 0.003126230670533209 2.2965862045316294 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC 2851 0.5800374348958334 TruSeq Adapter, Index 13 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC 2821 0.5739339192708334 TruSeq Adapter, Index 13 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2141 0.43558756510416663 No Hit CTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGCT 2082 0.42358398437500006 TruSeq Adapter, Index 19 (95% over 22bp) TCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC 1408 0.2864583333333333 TruSeq Adapter, Index 13 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTG 924 0.18798828125 No Hit ACTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTGC 920 0.18717447916666669 TruSeq Adapter, Index 19 (95% over 21bp) ACCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTG 661 0.13448079427083334 No Hit GCCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTG 616 0.12532552083333334 No Hit AGCTGTCTCTTATACACATCTGACGCTGCAGCTTTCGTATGCCGTCTTCTG 493 0.10030110677083333 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4429117838541667 0.0 2 0.0 0.0 0.0 2.1331787109375 0.0 3 0.0 0.0 0.0 3.0985514322916665 0.0 4 0.0 0.0 0.0 4.08203125 0.0 5 0.0 0.0 0.0 6.592000325520833 0.0 6 0.0 0.0 0.0 7.9766845703125 0.0 7 0.0 0.0 0.0 9.482421875 0.0 8 0.0 0.0 0.0 11.888427734375 0.0 9 0.0 0.0 0.0 12.79296875 0.0 10 0.0 0.0 0.0 14.766845703125 0.0 11 0.0 0.0 0.0 17.5018310546875 0.0 12 0.0 0.0 0.0 19.516398111979168 0.0 13 0.0 0.0 0.0 20.306396484375 0.0 14 0.0 0.0 0.0 20.583089192708332 0.0 15 0.0 0.0 0.0 21.139119466145832 0.0 16 0.0 0.0 0.0 22.350667317708332 0.0 17 0.0 0.0 0.0 23.958740234375 0.0 18 0.0 0.0 0.0 25.814208984375 0.0 19 0.0 0.0 0.0 26.785888671875 0.0 20 0.0 0.0 0.0 27.697550455729168 0.0 21 0.0 0.0 0.0 28.855387369791668 0.0 22 0.0 0.0 0.0 30.041707356770832 0.0 23 0.0 0.0 0.0 31.147054036458332 0.0 24 0.0 0.0 0.0 32.001953125 0.0 25 0.0 0.0 0.0 32.7569580078125 0.0 26 0.0 0.0 0.0 33.408203125 0.0 27 0.0 0.0 0.0 34.088541666666664 0.0 28 2.0345052083333334E-4 0.0 0.0 34.791056315104164 0.0 29 2.0345052083333334E-4 0.0 0.0 35.536295572916664 0.0 30 2.0345052083333334E-4 0.0 0.0 36.353759765625 0.0 31 2.0345052083333334E-4 0.0 0.0 37.119547526041664 0.0 32 2.0345052083333334E-4 0.0 0.0 37.816975911458336 0.0 33 2.0345052083333334E-4 0.0 0.0 38.502197265625 0.0 34 2.0345052083333334E-4 0.0 0.0 39.136555989583336 0.0 35 2.0345052083333334E-4 0.0 0.0 39.815266927083336 0.0 36 2.0345052083333334E-4 0.0 0.0 40.522867838541664 0.0 37 2.0345052083333334E-4 0.0 0.0 41.168009440104164 0.0 38 2.0345052083333334E-4 0.0 0.0 41.806640625 0.0 39 2.0345052083333334E-4 0.0 0.0 42.427164713541664 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCTA 20 7.02934E-4 45.000004 37 AAGTACG 20 7.02934E-4 45.000004 1 TCGTTAG 20 7.02934E-4 45.000004 1 GTACACG 20 7.02934E-4 45.000004 1 CGTGCGA 20 7.02934E-4 45.000004 2 TAGCGCG 20 7.02934E-4 45.000004 1 GAATCGT 20 7.02934E-4 45.000004 45 GTTAGCG 35 1.2100281E-7 45.000004 1 GTCTACG 20 7.02934E-4 45.000004 1 TCTAGCG 20 7.02934E-4 45.000004 1 ACGATTA 20 7.02934E-4 45.000004 11 AATGCCG 20 7.02934E-4 45.000004 37 ATATCGG 20 7.02934E-4 45.000004 2 TCGTGGT 20 7.02934E-4 45.000004 1 TCATGCG 35 1.2100281E-7 45.000004 1 ACTACGG 20 7.02934E-4 45.000004 2 TCCACGG 35 1.2100281E-7 45.000004 2 TATTACG 20 7.02934E-4 45.000004 1 CTCGCCT 20 7.02934E-4 45.000004 36 AATTACG 20 7.02934E-4 45.000004 1 >>END_MODULE