SRR2934739.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2934739.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1813396
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	9253	0.5102581013744378	No Hit
CCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	9211	0.5079420049454174	No Hit
CTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGCT	6743	0.3718437671639289	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5431	0.2994933263335752	No Hit
TCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	4025	0.22195924111446147	No Hit
ACTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTGC	2703	0.14905734875338866	No Hit
CGCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTG	2458	0.13554678625076927	No Hit
ACCTGTCTCTTATACACATCTGACGCTTAGCCAGTCGTATGCCGTCTTCTG	2008	0.11073146736840712	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTCGCA	25	3.8917E-5	45.000004	40
CGTTCCA	25	3.8917E-5	45.000004	37
TATTCGT	25	3.8917E-5	45.000004	29
AACGTAT	20	7.0343673E-4	45.0	36
CGAGTTA	20	7.0343673E-4	45.0	18
CGTAAAT	20	7.0343673E-4	45.0	16
CGCGTTG	20	7.0343673E-4	45.0	13
ATCGATT	20	7.0343673E-4	45.0	22
AGTCCGT	30	2.166198E-6	44.999996	15
ATATGCG	60	0.0	44.999996	1
GTCAACG	30	2.166198E-6	44.999996	1
CGCCGAT	30	2.166198E-6	44.999996	27
GCGATAT	80	0.0	42.1875	9
TCGATTG	65	0.0	41.538464	1
CGTTTTT	3285	0.0	41.36986	1
ACGGGTT	55	6.184564E-11	40.909092	5
CACGTAA	100	0.0	40.500004	27
TATTGCG	140	0.0	40.178574	1
GGTCGAC	40	3.4596997E-7	39.375	8
TATTACG	40	3.4596997E-7	39.375	1