FastQCFastQC Report
Sat 14 Jan 2017
SRR2934736.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2934736.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1666782
Sequences flagged as poor quality0
Sequence length51
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC103190.6190971584766334No Hit
GCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC99720.5982785991209408No Hit
CTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGCT60720.3642947908004766No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT56450.33867656358180015No Hit
TCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC39560.23734357582455295No Hit
ACTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC29600.17758771093040362No Hit
CGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTG26270.1576090934507332No Hit
ACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTG19580.1174718709465305No Hit
AGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTG17770.10661262240652947No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CAACGAT351.2123746E-745.00000421
CGTTCAA302.1660926E-645.00000420
CTACGTT302.1660926E-645.00000430
CTTGCGA302.1660926E-645.00000421
CGCGTAA351.2123746E-745.00000431
GCGTAAC351.2123746E-745.00000432
CCGCAAT351.2123746E-745.00000433
CTTCGTA253.891564E-545.022
GTACCGA406.8175723E-945.036
CACGCAA502.1827873E-1145.045
GCACGGA253.891564E-545.03
CGACATA253.891564E-545.013
CCGCTAG207.0342026E-445.01
CGTTCCG207.0342026E-445.025
CGTTAGC207.0342026E-445.012
ACGTCGC207.0342026E-445.020
CGTCCGT207.0342026E-445.030
CGATATC253.891564E-545.010
ATACCGA253.891564E-545.021
TCGAACG207.0342026E-445.01