Basic Statistics
Measure | Value |
---|---|
Filename | SRR2934736.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1666782 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC | 10319 | 0.6190971584766334 | No Hit |
GCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC | 9972 | 0.5982785991209408 | No Hit |
CTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGCT | 6072 | 0.3642947908004766 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 5645 | 0.33867656358180015 | No Hit |
TCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC | 3956 | 0.23734357582455295 | No Hit |
ACTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTGC | 2960 | 0.17758771093040362 | No Hit |
CGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTG | 2627 | 0.1576090934507332 | No Hit |
ACCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTG | 1958 | 0.1174718709465305 | No Hit |
AGCTGTCTCTTATACACATCTGACGCTGAGGGAATCGTATGCCGTCTTCTG | 1777 | 0.10661262240652947 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CAACGAT | 35 | 1.2123746E-7 | 45.000004 | 21 |
CGTTCAA | 30 | 2.1660926E-6 | 45.000004 | 20 |
CTACGTT | 30 | 2.1660926E-6 | 45.000004 | 30 |
CTTGCGA | 30 | 2.1660926E-6 | 45.000004 | 21 |
CGCGTAA | 35 | 1.2123746E-7 | 45.000004 | 31 |
GCGTAAC | 35 | 1.2123746E-7 | 45.000004 | 32 |
CCGCAAT | 35 | 1.2123746E-7 | 45.000004 | 33 |
CTTCGTA | 25 | 3.891564E-5 | 45.0 | 22 |
GTACCGA | 40 | 6.8175723E-9 | 45.0 | 36 |
CACGCAA | 50 | 2.1827873E-11 | 45.0 | 45 |
GCACGGA | 25 | 3.891564E-5 | 45.0 | 3 |
CGACATA | 25 | 3.891564E-5 | 45.0 | 13 |
CCGCTAG | 20 | 7.0342026E-4 | 45.0 | 1 |
CGTTCCG | 20 | 7.0342026E-4 | 45.0 | 25 |
CGTTAGC | 20 | 7.0342026E-4 | 45.0 | 12 |
ACGTCGC | 20 | 7.0342026E-4 | 45.0 | 20 |
CGTCCGT | 20 | 7.0342026E-4 | 45.0 | 30 |
CGATATC | 25 | 3.891564E-5 | 45.0 | 10 |
ATACCGA | 25 | 3.891564E-5 | 45.0 | 21 |
TCGAACG | 20 | 7.0342026E-4 | 45.0 | 1 |